Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04244 ATGAGTTCTCACATGGAGATTTCATCAATAAGAGGGTTACCTGAATTGggactaatAGAGGATCCTAACTTTCTCCATCACTGGAATAATCACCTAAATTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCtttacaaaaacattttttgtcaagtaatccaaatttcaacaacaaaacaTGCATGGAAACATCACCTACCGGAAGCGAAAGACCAGCGAAACAGCTTAAAAATAACAGCTGGAATTACAACAATAGTCCTCAAACATCAGAGACACAATATGCTAATTCTTGCTCCAATAATCTACTTTCATTTGCTGATTCGAATTACGAAAATCAATTGGGACTATTGAAGCCTAAGTCCGAGATGGTGTGTCCTAAAATCGATAACAATAGTACTCTTGCAAACATGTTTGGGAATCAAAACCATGTCTTCAAAGCTTTTCAAGAGGCCAAAGATATCGAGACTCGTCCTAATAAACTTTCTCAAGCTCATGATCACATAGTAGCTGAAAGGAAGCGTCGCGAGAAGCTAAGCCAGCGATTCATTGCTCTATCGGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAACAAATGGAAGAGAAAGTGAATGTTCTtgaggaagaaaagaaaaggaagaaaagtgtggaatcTGTTGTAATAGTGAAGAAATCTCAAATTTCTTCTAATGATGTTGAAGATTCTTCTTCTGATAATACTACATATGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGATAGAAGTGTCCTCATAAGACTACACTGTCTTAAGAGTCAAGGAGTTATAGAGAAAACAATAAGTGAAATTGAGAAACTTCATCTAAAAGTTATCAATAGCAGTGCCTTAACATTTGGAAATTTCACCCTTGATATAACCATTATTGCTCAGATGGATGTGGGATTTTGCATGACACTGAAGGATCTTGTGAGAAAGCTACGGTCAGCATATTCATCTTTCATGTGA 1038 0.3372 MSSHMEISSIRGLPELGLIEDPNFLHHWNNHLNSIDTNNLTASAFGDALQKHFLSSNPNFNNKTCMETSPTGSERPAKQLKNNSWNYNNSPQTSETQYANSCSNNLLSFADSNYENQLGLLKPKSEMVCPKIDNNSTLANMFGNQNHVFKAFQEAKDIETRPNKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVNVLEEEKKRKKSVESVVIVKKSQISSNDVEDSSSDNTTYDETLPEIEARFCDRSVLIRLHCLKSQGVIEKTISEIEKLHLKVINSSALTFGNFTLDITIIAQMDVGFCMTLKDLVRKLRSAYSSFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04244 345 SMART finulus 172 221 IPR011598 GO:0046983
Tsu08g04244 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 229 IPR036638 GO:0046983
Tsu08g04244 345 Pfam Helix-loop-helix DNA-binding domain 171 216 IPR011598 GO:0046983
Tsu08g04244 345 Gene3D - 164 238 IPR036638 GO:0046983
Tsu08g04244 345 Coils Coil 205 232 - -
Tsu08g04244 345 MobiDBLite consensus disorder prediction 60 98 - -
Tsu08g04244 345 CDD bHLH_AtNAI1_like 166 241 - -
Tsu08g04244 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Tsu08g04244 345 PANTHER BHLH TRANSCRIPTION FACTOR 6 344 - -
Tsu08g04244 345 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 6 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04244 Tsu-Chr8 60457370 60459906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04244 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.738 1.92e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g04244 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04244 - - gmx:100798018 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01714 02 15068896 15070835 Tsu08g04244 08 60457370 60459906 PCT