Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04241 ATGTTCACCGGAGTATTTTTCCGGCACGGCTCACCACCGTCCATATTTTTCACTACTCTGTTTTTCCTCTGTTTCGTTACTCATTCACACTCAAATGAGCTTCCATCTCTTATGAACTTCAAATCCTCAATCCAAACTTCTGATCCAAACATTTTCACTTCATGGAACCTATCAAATTCTCCTTGCAACTTCACCGGAATTCTCTGCAATTCCAAAGGTTTTGTTACACAAATCAACCTTGCACAGAAAAATCTTGTAGGCACACTTCCTTTTGATTCAATATGCAAGCTTCAATCACTTGAGAAAATCTCTTTGGAATCAAATTCTTTGCATGGAAGCATCACTGATGATTTGAAGAATTGCATAAACTTGAAGTACTTGGATTTAGGTGGAAATTTATTCATTGGAACATTTCCTGAATTTTCATCTTTGAATAAGTTGGAGTACTTGAATCTAAATTCAAGTGGAATTTCTGGTAAATTTCCATGGAAATCATTGGAAAATCTAACAACTCTCACTTTCTTAAGCCTTGGTGACAATCTTTTTGAAGAAAGTTCTTTTCCTTTAGAGATTCTAAAGCTTGAAAAATTGTATTGGCTTTATCTAACCAACAGTAGCATCTATGGAAAAATTCCATTTGGTCTTGGAAATCTCATTCAGCTTCAACATCTTGAGCTTTCTCATAACAATTTATCTGGTGAAATTCCACATGATATTGGAAAGCTTAAGAATCTAAGAGAGCTTGAGATATATGAGAACTATTTAACTGGAAAAATTCCGTTCGGATTTCGAAACCTTACGAATCTTGTTCGGTTTGATGCTTCGGTTAATTACCTTGAAGGTGATCTTTCTGAGCTTAAGTCATTGAAAAATCTTCAATCTCTTCAGCTTCTTGAAAACATGTTCTCAGGAGAGATTCCACAAGAGTTTGGAGATTTTAAGAATCTCACAGAACTTGCTCTTTATGATAACAAACTCACTGGTTTTCTTCCACAAAAGCTTGGTTCTTGGGTTGGAATGGCATTCATAGATGTTTCAGATAATTCACTTTCTGGTCCTATACCACCTGATATGTGCAAGAACAACCGAATTGATCTTATAGCTTTGTTGAATAACAGTTTCACAGGAAGTATACCAGAAAACTATGCAAATTGTACTTCTTTGAAACGGTTTAGAGTAAACAAGAATTCACTTTCTGGTGTTGTTCCGAAAGGTTTATGGGGCCtaccaaaattgaaaatttttgatgTTGCAAGGAACAAATTTGAAGGTTCTATTTCATCTGATATTGGAAAAGCTAAATCTCTAGCTCAACTTTTTTTATCTGATAATCAGTTCTCAGGTGAGTTACCATTAGAAATTTCAGAAGCTTCTTCTTTGGTTTCGATTCAGTTAAGCTCGAATCGTATTTCTGGTCGTATACCGGAAAATATAGGAAAATTGAAGAAACTAACTAGTCTTACTTTGAATAAGAACAATCTTTCTGGTGTTATACCAGATTCTATTGGTTCTTGTGTTTCTCTTACTGATGTAAACCTTGCTGAAAATTCCATTTCTGGTGTAATTCCAACTAGTATCGGTTCTTTGCGTGCGCTTAATTCATTGAACTTGTCTTCAAATATCCTTTCTGGTGAGATTCCGTCAAGTTTATCATCTCGAACACTTAGCCTTCTTGATTTATCAAACAATAAGTTGTTTGGTTCCATACCAGATTCACTTGCTATTTCAGCTTTCAAAGATGGTTTCATGGGAAATCCTAGACTATGCAGCCAAATTTTGAAGGATTTTCAACCATGTTCATTTGAATCTAGCAGCTCGAAGCGACTCCGAAACCTTGTGTTCTTTTTAGTTGCTGGTTTAATGGTTGTTCTAGTTGTTTCATCAGCATATTTCCTCTTCATGAGACTTAAACAGAAGAACAAGTTCGAGGAGCAAGTAGTCAAGACTAATTCATGGAATTTCAAGAAATATCATGTGCTGAACATCAATGAGAACGAAATTATTGATGGAATCAAAGCTGAGAATGTGATAGGAAAAGGAGGGTCAGGGAATGTTTACAAAGTTGAACTCAAAAGTGGTGAAGTTTTTGCTGTCAAACACATTTGGACTTCAAATTCAAAAAGTGATTATAGGAGCAGTTCAGCAATGTTAAAAAGGAGTTCAAATTCATCTGAGTATGATGCTGAGGTAGCAACTTTGAGTTCTATAAGGCATGTGAATGTGGTGAAACTTTATTGCAGTATCACAAGTGAAGATAGTAGTTTACTTGTTTACGAGTTTTTACCAAATGGAAGTTTGTGGGAAAGGTTGCATAATTGTAAGAAGACTCAGATGGGTTGGGATGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTATCTGCATCATTGTTGTGATAGAACTGTTATGCATAGGGATGTTAAATCAAGTAACATATTGCTTGATGAAGAATGGAAGCCAAGGATTGCTGATTTTGGACTTGCTAAGATTGTGCAAGGAGGAGCTGGTAATTGGACTCATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGAATATGCGTACACTAGTAACGTGACAGAGAAGAGCGATGTTTATAGCTTTGGCGTAGTACTGATGGAGTTGGTAACCGGGAAGAAGCCTGTGGAACAAGAGTTTGGAGAGAATAATGATATTGTCAGTTGGGTATGCAACAACTTTAGGAGCAAAGAAAGTGTACTAGAATTGGTGGATTCTACCATTGCAAAACATTTCAAAGAAGATGCTATTAAGGTGTTGAGAATTGCGATATTGTGCACCGCGAAAGTTCCATATTCAAGACCATCAATGAGAAAGTTGGTCCAAATGTTGGAAGAGGTAGAGCCATCAGCCATGTTCTCCAACAAAGTGATTGTCACCATAGATGGTTAA 2919 0.3638 MFTGVFFRHGSPPSIFFTTLFFLCFVTHSHSNELPSLMNFKSSIQTSDPNIFTSWNLSNSPCNFTGILCNSKGFVTQINLAQKNLVGTLPFDSICKLQSLEKISLESNSLHGSITDDLKNCINLKYLDLGGNLFIGTFPEFSSLNKLEYLNLNSSGISGKFPWKSLENLTTLTFLSLGDNLFEESSFPLEILKLEKLYWLYLTNSSIYGKIPFGLGNLIQLQHLELSHNNLSGEIPHDIGKLKNLRELEIYENYLTGKIPFGFRNLTNLVRFDASVNYLEGDLSELKSLKNLQSLQLLENMFSGEIPQEFGDFKNLTELALYDNKLTGFLPQKLGSWVGMAFIDVSDNSLSGPIPPDMCKNNRIDLIALLNNSFTGSIPENYANCTSLKRFRVNKNSLSGVVPKGLWGLPKLKIFDVARNKFEGSISSDIGKAKSLAQLFLSDNQFSGELPLEISEASSLVSIQLSSNRISGRIPENIGKLKKLTSLTLNKNNLSGVIPDSIGSCVSLTDVNLAENSISGVIPTSIGSLRALNSLNLSSNILSGEIPSSLSSRTLSLLDLSNNKLFGSIPDSLAISAFKDGFMGNPRLCSQILKDFQPCSFESSSSKRLRNLVFFLVAGLMVVLVVSSAYFLFMRLKQKNKFEEQVVKTNSWNFKKYHVLNINENEIIDGIKAENVIGKGGSGNVYKVELKSGEVFAVKHIWTSNSKSDYRSSSAMLKRSSNSSEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHNCKKTQMGWDVRYDIALGAARGLEYLHHCCDRTVMHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNWTHVIAGTLGYMAPEYAYTSNVTEKSDVYSFGVVLMELVTGKKPVEQEFGENNDIVSWVCNNFRSKESVLELVDSTIAKHFKEDAIKVLRIAILCTAKVPYSRPSMRKLVQMLEEVEPSAMFSNKVIVTIDG 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04241 972 SUPERFAMILY RNI-like 330 589 - -
Tsu08g04241 972 SUPERFAMILY L domain-like 53 389 - -
Tsu08g04241 972 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Tsu08g04241 972 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Tsu08g04241 972 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 11 964 - -
Tsu08g04241 972 Pfam Leucine rich repeat 483 540 IPR001611 GO:0005515
Tsu08g04241 972 SUPERFAMILY Protein kinase-like (PK-like) 662 954 IPR011009 -
Tsu08g04241 972 Gene3D Phosphorylase Kinase; domain 1 653 760 - -
Tsu08g04241 972 Gene3D Ribonuclease Inhibitor 142 365 IPR032675 -
Tsu08g04241 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Tsu08g04241 972 Pfam Protein kinase domain 674 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04241 972 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Tsu08g04241 972 SMART serkin_6 671 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04241 972 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Tsu08g04241 972 ProSiteProfiles Protein kinase domain profile. 671 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04241 972 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 964 - -
Tsu08g04241 972 SMART LRR_typ_2 481 505 IPR003591 -
Tsu08g04241 972 SMART LRR_typ_2 313 337 IPR003591 -
Tsu08g04241 972 SMART LRR_typ_2 409 433 IPR003591 -
Tsu08g04241 972 SMART LRR_typ_2 218 242 IPR003591 -
Tsu08g04241 972 Gene3D Transferase(Phosphotransferase) domain 1 761 967 - -
Tsu08g04241 972 Gene3D Ribonuclease Inhibitor 366 600 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04241 Tsu-Chr8 60434650 60438518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04241 17 962 Receptor kinase-like Gene Family AT1G09970 57.503 0.0 1064
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu08g04241 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04241 - - ccaj:109814095 1365.9