Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04213 atgttCCATTCTCTCAAAAACAAGTTTCAATGCAAACCAAACCCAAAAGAAGTTCATGATCCAAAGAAAATTAGGCACCAAAAAGATAATACTAATATTAATCATAGAACAAAGTCATGTTTACTTGATCATTCAAATATCATCCAAGGAAGCAAGAGGTACTTAACAAATTCATCAAGTTTCTATCAAGAATCTGAAGGGTGCCTTGATATAAGTGATCCTATAATCAATGAAATTCTATATGATAGCTCATCATTAAGTCAATGCAACAGTGGAATTAAGTATTGGGAAGGTTCTTTTAGAACAACAAGAAGGGTATCTACATCTTCAATATTGATGTGTTACAAATGTGGTGAGAAACTGAAAAACCTTAATGCTGTTGAAACACATCATATCACTGAGCATTCAGTCACTGAAGTTGAAGAAGATTCATCTAGGCATATTGTAGAAACAATATGTGAAAATGGACAAAGCTTTGTTAGTTCTGAATTGTGGCAGATTGATTGTATCTTAAAAGTCCACAACATGCCAAAAACACTTGCATGCTTTGAGGAGTATAGAGAAATAGTGAAGATTAATGCCAAGAAGCTACATGATAAGAATCATCATCCACGTTGTGTTGTTGATGGAAATGAGCTTTTAATGTTCCATGGCACTAACATTGCATGCTCTCTTGGAATAAATAATTCTTATAGTTTGTGCAATTTAGACTATTGTGGTGTATGTCAAATTCTAAGGTATGGTTTCTCTACTAACAAGAAATTTCAAGGTGCATTAGGAGTTTACACTACTTCAACAAGTGGAAAAGCCTTTGATTCCATTGATGATGAGAGAGCATTTACAAGAAAATCAGTTATAGTGTGTAGAGTAATAGCTGGGAGAGTTCATTCTCcttttgaagaaattcaagGAAAAGTTGATTCAAGATTTGATTCATTGGCTGAAAAATTAAGTAAGCATGGAAATATTGAGGAACTAAACTTGTTGAATCCTAAAGCTTTGCTTCCTTGCTTTGTGGTAATctacaaacaacaaacagtGAAAATTAAGAGGTTCCACTCAAGCTCAAGGATAAGTAGCATTTAA 1086 0.3232 MFHSLKNKFQCKPNPKEVHDPKKIRHQKDNTNINHRTKSCLLDHSNIIQGSKRYLTNSSSFYQESEGCLDISDPIINEILYDSSSLSQCNSGIKYWEGSFRTTRRVSTSSILMCYKCGEKLKNLNAVETHHITEHSVTEVEEDSSRHIVETICENGQSFVSSELWQIDCILKVHNMPKTLACFEEYREIVKINAKKLHDKNHHPRCVVDGNELLMFHGTNIACSLGINNSYSLCNLDYCGVCQILRYGFSTNKKFQGALGVYTTSTSGKAFDSIDDERAFTRKSVIVCRVIAGRVHSPFEEIQGKVDSRFDSLAEKLSKHGNIEELNLLNPKALLPCFVVIYKQQTVKIKRFHSSSRISSI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04213 361 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 344 - -
Tsu08g04213 361 Gene3D - 127 348 - -
Tsu08g04213 361 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 344 - -
Tsu08g04213 361 SUPERFAMILY ADP-ribosylation 141 344 - -
Tsu08g04213 361 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g04213 361 ProSitePatterns Zinc finger C2H2 type domain signature. 114 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04213 Tsu-Chr8 60279855 60282320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04213 100 343 C2H2 Transcription Factor Family AT5G54630 52.809 1.51e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04213 - - gmx:100792577 386.726