Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04201 ATGGCAGAGGAATTTCAAGCTGGAATTTGTGGTGAAACAtggtggaatattaataatTCAACAAGAAGTGTATTTCCTATTATGATGAACTCATCATCAACATGTTCTGTTGCAGCTAATGATGTTGGGAATTATAGTACTTGGCAAAATGAACTTTTGGGTTTGAAAGAAACAAGAACTTGTTCTGTTGATGAAACTAATAATAACTTTGATTTTTCTGATTGTGCTTTGAGTTTTCTTGATACTCAAAAGCCACAACAGAGTGAATCATCAGCTAATGGAACTGGTAGCATGTTGATTGATTCCACTTTACAAATTATGGGTTTTGATCTCTCATCTCCAACTTCATCTAATTGGAATCACTCCATATTTAATTGTAATGGAAGGCAAGAGAACAATTTTCACTCTGTGATTCAAGAAGAAACATGTTTAGATTCATCTAATGATTCACAAATCCAAGTTTCAACAGTTGATGCTTTCATCAAACCAATGGATCAAGAATTTTCAATAGATCAACAAAGTCTAAATTCTGTAACAAGCACTGGTTTATCATCAATTGgatcatttaatattaataattccTATGGTGGTTACCCTTCAAATTTAATACAAAGTTTATTTGATGATGATCCTCAACCTCAAACACATAACTCACTTTATACTAATCCTTCTTCTATGTCCTATTCATCTTCCAATGAACTTTCACCAACATGGTCTAATGTATCTTCCCTTATGAAACCTTCAATGCCAAAACAACACCAACTTAGTAGTGGATTGCAATTTTCCAATAATACCCCTTTTTGGAATGCTTCAGCTGAGGCACTTAATGACATCAGAGCTGGAGTTTTGGCTTCATCACAACCACAATATCAATCTCCTAACTTTGATCAAGATAACAAATTCAATTCCTCAAATGCTCTATTAAACAAgCTAAAGAGAGAGAAATCTCCAGAAACTAAAAACTCATCTGAAGCTGCAGTTAAGAGGCCAAGAATTGAGACACCATCCCCATTACCAACTTTTAAGGTTAGGAAAGAGAAGTTAGGGGACCGTATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCATCTGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTCAATgtTTTGAGCACTCCATATATGAAAAATGGATCTCCCATTCAACACCAACAGGGTTGTGATAATGCGAAGGACTCACAAGAGAAAAAACGAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCGATTTCAAGCACATTTCCAATGACAAATGAGACTCCCGTTGATTTCTGGACGCCTACATTTGGAGGCCCACTTTTTGGCCGATAG 1365 0.3538 MAEEFQAGICGETWWNINNSTRSVFPIMMNSSSTCSVAANDVGNYSTWQNELLGLKETRTCSVDETNNNFDFSDCALSFLDTQKPQQSESSANGTGSMLIDSTLQIMGFDLSSPTSSNWNHSIFNCNGRQENNFHSVIQEETCLDSSNDSQIQVSTVDAFIKPMDQEFSIDQQSLNSVTSTGLSSIGSFNINNSYGGYPSNLIQSLFDDDPQPQTHNSLYTNPSSMSYSSSNELSPTWSNVSSLMKPSMPKQHQLSSGLQFSNNTPFWNASAEALNDIRAGVLASSQPQYQSPNFDQDNKFNSSNALLNKLKREKSPETKNSSEAAVKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGSPIQHQQGCDNAKDSQEKKRDLRSQGLCLVPISSTFPMTNETPVDFWTPTFGGPLFGR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04201 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 442 - -
Tsu08g04201 454 Gene3D - 342 402 IPR036638 GO:0046983
Tsu08g04201 454 MobiDBLite consensus disorder prediction 208 232 - -
Tsu08g04201 454 CDD bHLH_AtbHLH_like 338 389 IPR045239 -
Tsu08g04201 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Tsu08g04201 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 399 IPR036638 GO:0046983
Tsu08g04201 454 MobiDBLite consensus disorder prediction 311 327 - -
Tsu08g04201 454 PANTHER TRANSCRIPTION FACTOR BHLH123 37 442 - -
Tsu08g04201 454 MobiDBLite consensus disorder prediction 310 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04201 Tsu-Chr8 60199591 60202701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04201 1 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.605 8.30e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04201 - - gmx:100794682 554.673