Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04198 ATGGAGAAAACAAAGTTCACACTTCTATTTCTTGCTAGTTTTTTCCATTTAACAATTATGTTTCCAACACCTTCAAAAGCAGAAGATACCATAACACCACCACAAATTATCACTTACAACCAAACACTAATTTCACCTTCACAGAATTTTGAACTTGGTTTCTTCACTCCTAACAATTCCACTTACACATATCTTGGAATATGGTATAAACAAATTCACAAAAAGACTATTGTTTGGGTTGCAAATAGAGACAAACCACTTCATAACCATAATGGTTCATTAACATTTAACAACGATGGAAAACTCATTATTCTCAACCACAAAGGAAGTGTTCTATGGTCCTCAAATTCATCTGGGCCAGCAAAAAATCCAGTAGCACAGCTTCTAGATTCTGGAAACTTTGTTTTGAAGAATTTTGTAGATGAAAACTCAGAAGAATTTTTATGGCAAAGTTTTGATTACCCTTCTGATACATTGTTACCAAGAATGAAAATTGGTTGGAACTTCAAAACTGGTTTGAACATTCATTTGAGTTCTTGGAGAAACAGTGATGATCCTTCTTCAGGTGAATATAGTTATAGCGTTGATCCGCGAGGACTTCCTCAGCTTTTTCTTCGAAAAGGTAAGAAGAAAATTTTCAGAAGTGGACCATGGTATGTGGAACAATACAAAGATGATCCAGTTTTAAGGGAAAATCCAATTTTCAAACCGGTTTTCGTTTTTGATTCTAATGAAGTGTATTACTCTTATGAGACAAAAGACAACATTGTTTCAATGTTTGTGCTTAGTGAAACTGGTTTGATTCAGCATTTCACATGGAACGATCATCGTTCGAGTTGGTTTTCTGAGTTTAATATTCAAGGTGATCAATGTGATGATTATGGTCTTTGTGGTGCTTATGGAACTTGTAACATCAAAAGCTCTCCTATTTGTAAATGTTTGGAGGGTTTTGAACCAAGGATTATGCATGAATGGAAAATGCTTAATTGGTCTAGTGGATGTGTTAGgaagaattcaaaagtttgtAGAAATGGAGATGTATTTAAGAAGTTCACAGGAATGAAACTACCAGATTCTGTTGAGTTTCATGTAAACTATAGCATTAACATTAATCAATGTGAAATAGAATGCTCTAAGAACTGTTCTTGTGTTGCTTATGCAAAACTTGATGTAAATGCTAGTGGTAATGGTTGTATTGCTTGGTTTGGAGATTTATTTGACATAAGGGAGGATTCTGTGAATGGACAAGATTTCTATGTGAGAGTTTCAGCTTCCGAACTAGGTATGAATATTCGACATTCAAATGTTGACAGAAACAAAAGGAAGAAACTCATAATACTTCCTGTGAGTATATCAGTAGCCTCAACTATCATCGTCTCGGCATTGTGGTTGATAATTAAGAAATGGAGAAGAAATAGAGCTGAAAAGACAGATATTCAATTTAGTGTTAGCAGAACTAAGAGTGAGTTTGAACTCCCATTTTTTGAGATTGCCATTATTGAAGATGCAACAAGGAATTTCTCTTTTAACAATAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGCCAACTTCCATCAGGACGCGAAATAGCGGTGAAGAGACTCTCAGAGAATTCTGGACAAGGCCTGCAAGAATTCAAGAATGAGGTTATTTTCATCTCTCAACTTCAACATCGAAATCTCGTCAAGCTTCTTGGTTGTTGCATTCAAGGAGAAGATAAAATGTTGGTCTATGAATACATGCCAAATAGAAGCTTGGACTCGTTATTATTCGATGAAACGAAGCGCTCTGTGCTTAGTTGGGAAAAGAGGCTAGACATTATTAACGGCATTGCTAGGGGACTTGTCTACCTTCACAGAGATTCGAGATTAAGAATAATTCATAGAGACCTAAAGGCAAGCAATGTTCTTTTAGATGGTGACATGAATCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAATTACCGAAAAGACGAAAAGGGCAGTTGGAACATATGGATATATGCCTCCAGAGTATGCAATGGATGGACATTTCTCTTTCAAATCGGATGTTTATAGCTTTGGAGTTTTACTTTTAGAGTTGTTAAGTGGCAAGAAAAACAAAGGGTTTTTTCACCCTGATCATAAATTGAATCTCCTAGGCCATGCATGGAAGCTTTGGAATGAAGATAGAGCCATTGAGTTAATTGATCCATTACTTGAGGATCAAGTTACTACCCTTCAATCATTTTTAAAGTGTATTCAAATTGGTCTTTTATGTGTTCAACAACATCCAGAAGAAAGACCAACAATGTCATCAGTGGTTTTGATGTTGGATGGTGAAAGTGTGTTGGTCCCTAAACCTAGAAGACCAGGTTTGTATTCAGAGAGATGTTTCTTAGATACAGATTCATCATCACGTGGTATGCTCAATTCTGGTTCCAATGACATAACTGTTACCACTACTTTAGTAGAAGGTCGTTAA 2487 0.3571 MEKTKFTLLFLASFFHLTIMFPTPSKAEDTITPPQIITYNQTLISPSQNFELGFFTPNNSTYTYLGIWYKQIHKKTIVWVANRDKPLHNHNGSLTFNNDGKLIILNHKGSVLWSSNSSGPAKNPVAQLLDSGNFVLKNFVDENSEEFLWQSFDYPSDTLLPRMKIGWNFKTGLNIHLSSWRNSDDPSSGEYSYSVDPRGLPQLFLRKGKKKIFRSGPWYVEQYKDDPVLRENPIFKPVFVFDSNEVYYSYETKDNIVSMFVLSETGLIQHFTWNDHRSSWFSEFNIQGDQCDDYGLCGAYGTCNIKSSPICKCLEGFEPRIMHEWKMLNWSSGCVRKNSKVCRNGDVFKKFTGMKLPDSVEFHVNYSININQCEIECSKNCSCVAYAKLDVNASGNGCIAWFGDLFDIREDSVNGQDFYVRVSASELGMNIRHSNVDRNKRKKLIILPVSISVASTIIVSALWLIIKKWRRNRAEKTDIQFSVSRTKSEFELPFFEIAIIEDATRNFSFNNKIGEGGFGPVYKGQLPSGREIAVKRLSENSGQGLQEFKNEVIFISQLQHRNLVKLLGCCIQGEDKMLVYEYMPNRSLDSLLFDETKRSVLSWEKRLDIINGIARGLVYLHRDSRLRIIHRDLKASNVLLDGDMNPKISDFGMARMFGGDQITEKTKRAVGTYGYMPPEYAMDGHFSFKSDVYSFGVLLLELLSGKKNKGFFHPDHKLNLLGHAWKLWNEDRAIELIDPLLEDQVTTLQSFLKCIQIGLLCVQQHPEERPTMSSVVLMLDGESVLVPKPRRPGLYSERCFLDTDSSSRGMLNSGSNDITVTTTLVEGR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04198 828 SMART blect_4 34 155 IPR001480 -
Tsu08g04198 828 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04198 828 Gene3D Phosphorylase Kinase; domain 1 466 582 - -
Tsu08g04198 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Tsu08g04198 828 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Tsu08g04198 828 Gene3D Transferase(Phosphotransferase) domain 1 583 785 - -
Tsu08g04198 828 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 19 823 - -
Tsu08g04198 828 CDD STKc_IRAK 513 781 - -
Tsu08g04198 828 Gene3D - 24 152 IPR036426 -
Tsu08g04198 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 186 IPR036426 -
Tsu08g04198 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Tsu08g04198 828 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Tsu08g04198 828 Pfam PAN-like domain 342 408 IPR003609 -
Tsu08g04198 828 Pfam D-mannose binding lectin 76 181 IPR001480 -
Tsu08g04198 828 CDD PAN_AP_plant 343 423 - -
Tsu08g04198 828 SMART serkin_6 507 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04198 828 SUPERFAMILY Protein kinase-like (PK-like) 488 779 IPR011009 -
Tsu08g04198 828 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 823 - -
Tsu08g04198 828 SMART ntp_6 343 422 IPR003609 -
Tsu08g04198 828 CDD B_lectin 35 155 IPR001480 -
Tsu08g04198 828 Pfam Protein tyrosine and serine/threonine kinase 508 777 IPR001245 GO:0004672|GO:0006468
Tsu08g04198 828 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04198 Tsu-Chr8 60183099 60186580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04198 500 807 Receptor kinase-like Gene Family AT4G23140 56.918 1.48e-122 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g04198 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04198 - - gmx:100804024 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01776 02 15879979 15894962 Tsu08g04198 08 60183099 60186580 PCT