Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04197 ATGAAAAGTTCCACTATTGTAAAACTCCTTTTCAactttattttatgtatatgcTTTTTCAATATTGTAATCTCTAATGATACATTAACTGTAACACAATCTCTAGGATTTAACCAAACACTTGTATCTCCACAAAAAGTGTTTGAGTTTGGTTTCTTTAACACAAGCATTTCAAAATGGTACATAGGTATATGGTACAAAGATTTAGATTTTCCAGATAAAACATTTGTTTGGGTGGCAAATAGAAACACCCCACTTGAAAATTCTAATGGAACTCTCAAGATTGATGGTGGAAATTTGGTTCTTTTTAACCAAACAGATAGTCTCATATGGTCAACAAATCAAACTATTTCATCTGTTTCAAATCCTGTTCTTCATCTTTTGGATGATGGAAATTTGGTTCTCAAAGAAGCACAAGAGAAAAATACTACTAACTATATATGGCAGAGTTTTGATCATCCAACAGATACTTTGTTACCGGGTATGAAACTTGGTTGGAACCTTGACACTCATGTTGAGATTCGAATAACTTCGTGGAAAAGTCAAGATGATCCATCAAGTGGAGATGATTATTTTAGTCTTGATTATCATGGTGTTCCAGATATTTACTTGTGGAACAAGCAACAAAGGGTGTTTAGAACTGGTTCATGGAATGGTGAAACTTTTGGTGGAGTGCCAATACTAAATACAATAGCTATTCTTAATGATAAAATAGTTGTTGATAATCATCAAGCTTATTACTATCCTGCAAAGCTATTTCAGTCTAATTTGTCTAGACTTCTAGTGAATTGGACTGGTTCGGTCGAACGTTATGCGTGGATCGAAAGCACTAAAATTTGGAGCAAAACATGGAATGCACCAGTTGTAGAATGTGATCATTATGGAAATTGTGGTCCTTTTGGTATCTGTGACTCAAATGCTTTTCCTATATGCAAGTGTGTTACAGGATTCAATGTCAAGAATCAGAGGCAATGGGATTTGAGAAATTTTTCTGATGGTTGTGTGAGGAAGACAAAATTAGAATGTGGAAAGGATAAGTTCTTGCATTTGAAGCATGTGCAATTGCCAGATACTAGAAGTGTGTTTGTGAACAAGAGTATGACTTTATTGGAATGCGAAAATATGTGCCTCAAAGATTGTTCTTGCACTGCCTATACTAATGAAGTGATTACTAGTGGTGGGAGTGGTTGTGTTATATGGAATTATAGTCTTGTAGATATGAGACAGTTTTCTGAAGATGGACAAGATCTCTATATCAGATTAGCAGCTTCTGATGTAGGTGACACAGACTCTTCTGGTGGCGCCAAAAAGAATGCCGGAAAGATTGCTGGAATTACAATTGCTATAGCTATCCTTATATTGGGAGTGATTATATTCATTTTGTGGAAGAGAAGGAAATCACAAATAATACAGACAGAGAATACTAATAAGAGAGCTAATTCTAAAAGAGATCAAAAAACACTGTTACCTGAGGTGATGTTATCAAATAACAGAGAATATTTAGATGAAAGAAACATGGATGACCTTGAGTTACCACTGTTTGATTTTCATGTCATATCAGATGCTACAAACTCCTTCTCTTTAGCAAATAAACTTGGCGAAGGAGGCTTTGGAACTGTTTATAAGGGTAGGCTGGTTGATGGCTCGGAAATTGCTGTGAAGAGGTTATCAACAAGCTCAGGACAAGGAAATGTAGAATTCCAGAATGAGGTAAGATCAATTGCAAAGCTTCAACATCGAAATCTTGTACGGCTCTTCGGTTGCTGCATTCAAAAAGAAGAGAGGATGTTGATCTATGAGTACTTGGAAAATAACAGCCTAGAGTCTATTTTATTTGACAAATCAAAGAGTTCCATGCTAGATTGGCCAATGAGGTTCAATATCATATGTGGAATAGCCAAAGGGCTTCTTTATCTCCATCATGATTCAAGATTTAGAATTATTCATAGGGATCTTAAGGCAAGCAATGTTCTACTTGATGGAGAAATGAATCCAAAGATATCAGATTTTGGGATTGCTAGAATTTTTGACAATGATCAAACACACTCTAACACAAAGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGGGTGGATACTTTTCGGTGAAATCAGATGTTTTCAGTTTTGGTGTTCTCGTGTTAGAGATCATAAGCGGCATGAAGAATAGAGGATTTCATATGTCAGATGACCTAAATCTTCTAGGACATGCATGGAGGCTATGGAATGAAGGGAAAGCAATGGAACTAATAGATTCATCATTTGCAGATTCATATTTAGAATCAGAAGTTATAAGATGCATAAATGTGGGTCTAATATGTGTCCAAGAAAAAATAGAAGACAGACCTATAATGCCTTCAGTGGTAATGATGTTGAATAGTGAAACATCATTGCCACAACCGAAACACCCCGGATTCGTCCTTGGAAGGAATCCAGGTGAATCTGATTCATCTTCGGCTAGGCAAGATGAATCACACTCGATAAACCAAGTCACGGTTACAATAGTAAATGGAAGGTAG 2532 0.3586 MKSSTIVKLLFNFILCICFFNIVISNDTLTVTQSLGFNQTLVSPQKVFEFGFFNTSISKWYIGIWYKDLDFPDKTFVWVANRNTPLENSNGTLKIDGGNLVLFNQTDSLIWSTNQTISSVSNPVLHLLDDGNLVLKEAQEKNTTNYIWQSFDHPTDTLLPGMKLGWNLDTHVEIRITSWKSQDDPSSGDDYFSLDYHGVPDIYLWNKQQRVFRTGSWNGETFGGVPILNTIAILNDKIVVDNHQAYYYPAKLFQSNLSRLLVNWTGSVERYAWIESTKIWSKTWNAPVVECDHYGNCGPFGICDSNAFPICKCVTGFNVKNQRQWDLRNFSDGCVRKTKLECGKDKFLHLKHVQLPDTRSVFVNKSMTLLECENMCLKDCSCTAYTNEVITSGGSGCVIWNYSLVDMRQFSEDGQDLYIRLAASDVGDTDSSGGAKKNAGKIAGITIAIAILILGVIIFILWKRRKSQIIQTENTNKRANSKRDQKTLLPEVMLSNNREYLDERNMDDLELPLFDFHVISDATNSFSLANKLGEGGFGTVYKGRLVDGSEIAVKRLSTSSGQGNVEFQNEVRSIAKLQHRNLVRLFGCCIQKEERMLIYEYLENNSLESILFDKSKSSMLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNVLLDGEMNPKISDFGIARIFDNDQTHSNTKRVVGTYGYMSPEYAMGGYFSVKSDVFSFGVLVLEIISGMKNRGFHMSDDLNLLGHAWRLWNEGKAMELIDSSFADSYLESEVIRCINVGLICVQEKIEDRPIMPSVVMMLNSETSLPQPKHPGFVLGRNPGESDSSSARQDESHSINQVTVTIVNGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04197 843 Pfam PAN-like domain 342 407 IPR003609 -
Tsu08g04197 843 MobiDBLite consensus disorder prediction 804 835 - -
Tsu08g04197 843 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Tsu08g04197 843 Pfam D-mannose binding lectin 75 180 IPR001480 -
Tsu08g04197 843 SMART serkin_6 526 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04197 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Tsu08g04197 843 ProSiteProfiles Protein kinase domain profile. 526 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04197 843 PIRSF SRK 1 843 IPR024171 GO:0004674
Tsu08g04197 843 CDD STKc_IRAK 532 797 - -
Tsu08g04197 843 Pfam Protein tyrosine and serine/threonine kinase 528 728 IPR001245 GO:0004672|GO:0006468
Tsu08g04197 843 Gene3D Phosphorylase Kinase; domain 1 491 601 - -
Tsu08g04197 843 CDD B_lectin 32 154 IPR001480 -
Tsu08g04197 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Tsu08g04197 843 PANTHER - 12 841 - -
Tsu08g04197 843 SUPERFAMILY Protein kinase-like (PK-like) 510 796 IPR011009 -
Tsu08g04197 843 Gene3D - 21 152 IPR036426 -
Tsu08g04197 843 Pfam Domain of unknown function (DUF3403) 798 843 IPR021820 GO:0004674
Tsu08g04197 843 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Tsu08g04197 843 MobiDBLite consensus disorder prediction 816 835 - -
Tsu08g04197 843 Gene3D Transferase(Phosphotransferase) domain 1 602 805 - -
Tsu08g04197 843 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Tsu08g04197 843 SMART blect_4 32 154 IPR001480 -
Tsu08g04197 843 CDD PAN_AP_plant 338 422 - -
Tsu08g04197 843 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Tsu08g04197 843 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 841 - -
Tsu08g04197 843 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04197 Tsu-Chr8 60173691 60177643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04197 438 810 Receptor kinase-like Gene Family AT4G23190 51.706 1.11e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g04197 PK_Tyr_Ser-Thr 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04197 - - aip:107621503 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01777 02 15896976 15938929 Tsu08g04197 08 60173691 60177643 PCT