Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04194 ATGAGAGGTTTCTTTCTCTTGTTCTTGTTCAtcacttcattttcttttctcatcACAATCTCAACCTCTACAGATACCTTAACCTCACCACAAATTCTCAGCACAAATCAAACTCTTGTGTCATCCAACCAAACATTCATTCTTGGTTTCATCCCAGGAACAAATTCAAACATATATTTAGCCATATGGTACAAAAACATCAACCCAAGAACAATTGTTTGGGTTGCAAACAGAGACAaccctcttcaaaaaaattcaaacaatgatGGTTTTCTCAAAATTGGTGATAATGGAAACATAGTACTTCtcaattcatcatcaaacaACAACCTCGTATGGTCTTCGAATCAAACAACAGTTACTAGAAACCAACTTGTTCTTCAGCTTTTGGATGATGGAAATTTAGTTCTAagagaaaaaaatgtgaatGACCCAACAAAATATCTATGGCAAAGTTTCGATTTTCCAACAGATACTTTGTTACCATCCATGAAAATGGGTTGGAACTTCGACAAAAAAACCGAAAAGCATTTAACTTCATGGAAGATCACAGGTGATGATCCTTCAACAGGTGATTATtcattcaaaattgattttcatgGTTTGCCAGAGATTTTCCTATGGAAtgatgaaaaaattatatatcgAAGTGGACCTTGGAATGGCGAAAGATTTAGTGGTGTACCGGAGATGGAACCGGATACAGATTCGatagttttcaatttttcatcgAATGAACACGGTGTTAATTACTCGTTTACAATTGGAAATCCATTAATTTTTTCGCGGCTCGTGGTGGATTCGTCTGGTGTACTTCAACGTCGAACTTGGGTTCAAAGTACTAAAACTTGGACAACGTTTTGGTATGCACCGAAAGATCAATGCGATTTTTACAAAGTGTGTGGTCCATATAGTGTTTGTGATTCGAATGCTTCACCTGTTTGTGAATGTGTGAAAGGTTTTAGTCCTAAGAATGAACAAGCTTGGAAATTGAGAGATGGATCAGATGGGTGTGTGAGGAATACAAATTTGGATTGTGAGAGtgataaattttatcttttggagAATGTGAAGTTGCCTGAGACAAGTTCTGTGTTTGTGAACATGACAATGGGGATTGATGAATGTGGTAATTTGTGTCATAGGAATTGTTCTTGTAATGGTTATGCTAATGTTTATGTTACTAATGGTGGAAGTGGTTGTGTTATGTGGTTTGGTGAACTTGTTGATATAAGAAGTTATTCTGATGGTGGACAAGATCTTTTTGTTAGATTAGCAGCTTCTGAGATAGATAACTCAGGATCAAGTGGCTCTCACAAGAAAAATCACAAAGCTGAGATTATAGGAATTACAATTTCTGCAGCTGTTATAATCTTGGGATTGGGATTCATTTTATGTAGGAAGAGAAAATTGCTAAGTAAATTTAATGGAAAGACAGACAACAGAGGTTCTCTCCAAAGAAGTAGGGATTTGTTAATGAATGAGGTGGTGTTTTCAAGTAAAAGAGGTAGCTCAGGAGAAAGGGACATGGATGACTTAGAGTTAccaatgtttgattttaatacCATAACAATCGCTACAAACAACTTCGTTGAAGCAAATAAACTCGGAGAAGGAGGCTTTGGTATTGTTTATAGGGGAAGGTTGATTGAAGGCCAAGAAATTGCTGTCAAAAGGTTATCAAAAACTTCAGGACAAGGAGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGCCAAACTCCAACACAGAAATCTCGTTCGACTATTAGGTTGCTGCATCGACAAGGATGAGAAGCTTCTAGTGTATGAGTACATGGAAAATCGAAGCCTTGATTCCATTTTGTTTCACAAAACTAGAAAACCGTTATTAGACTGGAAAAGGCGATATGACATTATATGTGGAATAGCTAGAGGACTTCTATATCTGCATCATGATTCAAGACTCCGGATTATCCATAGAGATCTCAAGGCAAGTAACATACTACTTGATAGTGAAATGAATCCAAAAATATCGGATTTTGGGATGGCTAGAATATTTGGACAAAATCAAACAGAAGCAAATACATTGAGAGTTGTTGGAACATACGGCTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCAGTGAAATCAGATGTATTTAGCTTTGGAGTTCTTGTGCTAGAAATCATAAGTGGAAGGAAAAATAGAGGATTCTACTACGCAAATGATGATATGAATCTTCTAAAAAATGCATGGACACAGTGGAGAGAAGGCACTGCATTGGAACTCGTTGATTCGTCAATTGGCGAATCATTTACACCATCTGAAGTTCTTAGATGCATACATGTTGGACTATTGTGTGTCCAAGAACGCGCAGAAGATAGGCCAACAATGCCTTCGGTGCTCTTGATGCTTGGCAGTGAAACTGCACTAATGCCAGAACCTAGAAGCCCCGGGTTTTCAGTCGGAAGGTCAAAGAATCCTCCTGAAACTGATTCCTCTTCAAGTAAGCAAGATGAAACATGGAGTGTGAACCAAGTCACTGTCACATTGCTAGATGCTAGGTAG 2556 0.3549 MRGFFLLFLFITSFSFLITISTSTDTLTSPQILSTNQTLVSSNQTFILGFIPGTNSNIYLAIWYKNINPRTIVWVANRDNPLQKNSNNDGFLKIGDNGNIVLLNSSSNNNLVWSSNQTTVTRNQLVLQLLDDGNLVLREKNVNDPTKYLWQSFDFPTDTLLPSMKMGWNFDKKTEKHLTSWKITGDDPSTGDYSFKIDFHGLPEIFLWNDEKIIYRSGPWNGERFSGVPEMEPDTDSIVFNFSSNEHGVNYSFTIGNPLIFSRLVVDSSGVLQRRTWVQSTKTWTTFWYAPKDQCDFYKVCGPYSVCDSNASPVCECVKGFSPKNEQAWKLRDGSDGCVRNTNLDCESDKFYLLENVKLPETSSVFVNMTMGIDECGNLCHRNCSCNGYANVYVTNGGSGCVMWFGELVDIRSYSDGGQDLFVRLAASEIDNSGSSGSHKKNHKAEIIGITISAAVIILGLGFILCRKRKLLSKFNGKTDNRGSLQRSRDLLMNEVVFSSKRGSSGERDMDDLELPMFDFNTITIATNNFVEANKLGEGGFGIVYRGRLIEGQEIAVKRLSKTSGQGVEEFKNEVKLIAKLQHRNLVRLLGCCIDKDEKLLVYEYMENRSLDSILFHKTRKPLLDWKRRYDIICGIARGLLYLHHDSRLRIIHRDLKASNILLDSEMNPKISDFGMARIFGQNQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIISGRKNRGFYYANDDMNLLKNAWTQWREGTALELVDSSIGESFTPSEVLRCIHVGLLCVQERAEDRPTMPSVLLMLGSETALMPEPRSPGFSVGRSKNPPETDSSSSKQDETWSVNQVTVTLLDAR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04194 851 SMART serkin_6 530 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04194 851 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Tsu08g04194 851 SMART blect_4 30 156 IPR001480 -
Tsu08g04194 851 PIRSF SRK 1 851 IPR024171 GO:0004674
Tsu08g04194 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Tsu08g04194 851 CDD PAN_AP_plant 342 426 - -
Tsu08g04194 851 Pfam Receptor serine/threonine kinase 486 520 IPR022126 GO:0004674
Tsu08g04194 851 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 850 - -
Tsu08g04194 851 MobiDBLite consensus disorder prediction 808 840 - -
Tsu08g04194 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 222 IPR036426 -
Tsu08g04194 851 SMART ntp_6 346 425 IPR003609 -
Tsu08g04194 851 Pfam PAN-like domain 346 411 IPR003609 -
Tsu08g04194 851 Gene3D Phosphorylase Kinase; domain 1 505 605 - -
Tsu08g04194 851 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Tsu08g04194 851 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Tsu08g04194 851 ProSiteProfiles Protein kinase domain profile. 530 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04194 851 Gene3D - 18 153 IPR036426 -
Tsu08g04194 851 Pfam Protein tyrosine and serine/threonine kinase 533 797 IPR001245 GO:0004672|GO:0006468
Tsu08g04194 851 Gene3D Transferase(Phosphotransferase) domain 1 606 808 - -
Tsu08g04194 851 CDD STKc_IRAK 536 801 - -
Tsu08g04194 851 SUPERFAMILY Protein kinase-like (PK-like) 513 801 IPR011009 -
Tsu08g04194 851 Pfam D-mannose binding lectin 71 182 IPR001480 -
Tsu08g04194 851 Pfam Domain of unknown function (DUF3403) 803 851 IPR021820 GO:0004674
Tsu08g04194 851 CDD B_lectin 31 156 IPR001480 -
Tsu08g04194 851 ProSiteProfiles PAN/Apple domain profile. 346 426 IPR003609 -
Tsu08g04194 851 PANTHER - 13 850 - -
Tsu08g04194 851 MobiDBLite consensus disorder prediction 820 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04194 Tsu-Chr8 60156584 60162172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04194 518 818 Receptor kinase-like Gene Family AT4G11530 63.907 4.97e-134 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g04194 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04194 - - gmx:100797331 1246.88