Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04193 ATGATGCTAAAAACAtaccaaaaacaacaacaaaaacgtttactttttttgtttttgttctgtttcCTCTGTTTTTGTTCTGAATTCACACGTGTTACATCATCACCTTCAAGTTTCAGTATCAAACATGGTGATTTCATTAGAGATAAAGAAGGTGAAGTTTTAGTTTCAGATGGTTTCAACTTTGTAATGGGTTTTTTCGGTTCTTCTTCACGTTACGTTGGAATTTGGTATTATAACTTTCCTGGTTCACAACCTATTTGGGTTGCAAATAGAAACAAACCCATCAATGGAAATGGTGGTTCTTTCACTATATCAAGAAATGGTAATTTAGTTATCATAGATGGAAACAAGAATCAAATCTGGTCTACAAATGTTTCTGTTACTCACAACAACAATAAGAATAATAACTCTGAAGCTGTTCTTAGAGATGATGGTAATCTTGTTCTTTCAAATGGGACAGGTGTTGTATGGGAAAGTTTTGAGAATCCAAGTGATACTTATGTTCCTGGTATGAAAGTTCCTGTGAATGGTAAAAAGAAgagttttttctttacttcatGGAAATCAACTACAGATCCTTCAGAAGGGAATCATACTATGGGAGTTGATCCACAAGGGTTACCACCACAGATTGTAGTTTGGGAAGGAGACAGAAGAAAATGGAGAAGTGGTTATTGGGATGGTAGGGTTTTTAATGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTGCTTAATTGGGATAATGGAGAAAGGTGTTTGGTTTATAATGATAATGAGTTTAAGGTCAATGGTACTAGTTCagttaggtttcaaattggttgGGATGGTATTGAAAGAGAGTTTATATGGGATGAAAATGTGAAAAGGTGGGTTGAGATACAACAAGGGCCTCATAATCAGTGTGAGTTTTATAACTATTGTGGTGATTTTGGAGTATGTGATTTATCGGTTTCTGGTTCGGCTATTTGTAGATGTTTACAAGGGTTTGAACAAAAGGATAAGAAGAATTGGTCAAGTGGGTGTAAGAGGATAACACCGTTGAAAGGTGATCAGAAAAATGGGAATGATACACAGGTGAATAATGTTGGTGACGACGGTTTCTTGGAGAGTATATGTATGAAACTACCCGATTTTGCAAATGTGGTAGATACTAAGGATTGTGAAGGTACATGTTTGGGGAATGCTTCTTGTACTGCTTATGCAGTAGTTGTTGGAATTGGTTGTATGATTTGGTATGGAGATTTGGTTGATGTTCAACACTTCGAACGTGGTGGAATTGGAAATACATTGCAAATTCGTCTCGCTCATTCTGATTTAGGCGATGGAGGGAAAAACAAGAggattatgattgtaataataTCAACTGTTCTAGCAGGACTAATCTGCCTAGGAATCATTGTATGCTTGGTATGGAGATACAAGAGAAAACTCAAAGTTTTGCCTACAGTTTCTTCAGTGTCATGTTGCAAGAATAATGACGTACTACCACTCTTTGATGCACGTAAGAGCAGAGAGATATCAGCTGAAATATCAGGACCAGTTGAACTTGGTTTGGAAGGAAATCAACTAAGCGGAGCAGAGCTtccattttacaatttcagctGCATGTCAGTAGCCACCAACAATTTTTCTGAAGAAAATAAGCTTGGACAAGGCGGTTTCGGTCCTGTGTATAAGGGAAAACTTCCATCCGGAGAAGAAATAGCTGTCAAGAGGCTTTCTAGACGGTCCGTCCAAGGTTTAGAGGAGTTCAAAACTGAAATGATGCTGATTGCAAAACTACAACATAGAAATCTGGTTAGACTAATGGGATGTTCTATTCAAGGGGATGAAAAGTTGCTTGTATACGAATTTATGCCGAACAAAAGCTTGGATTGCTTTTTATTTGATCCTATCAAGCAAACACAATTAGACTGGGCGAGACGATATGAAATCATTGAAGGTATTGCAAGAGGACTACTTTATCTGCATCGCGATGCAAGACTCAGAATAATCCATCGAGACCTAAAAGCTAGCAACATTTTGTTAGATGAAAACATGAACCCGAAAATATCAGACTTTGGCTTGGCCCGAATATTCGGTGGAAACCAGAATGAAGCCAATACAGCTAGAGTGGTTGGTACATATGGATATATGTCTCCCGAATATGCCATGGAAGGTCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGCATATTGTTGCTAGAGATTTTGAGCGGCCGCAGAAACACTAGCTTTCGCCATTCAGATGATTCAAGTCTCATAGGATATGCGTGGAATCTTTGGAACGATCGCAGAGCAATGGAACTTGTCGATGCTTGCATTCGTGATTCGAgtcctaaaaacaaaatattgagATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCAAAGACCGAACATGTCCAATGTTGTGTTGATGCTTGAGAGTGAAGCAAAAACTCTTCCCATACCTACGCAGCCTTTGATTACTTCGATGAGATCTGAGGATAGAGAGTTTCACATGGATGGTCTTGATGTTTCAAATGATCTCACAGTAACAATGATGATAGGGAGATAG 2583 0.3639 MMLKTYQKQQQKRLLFLFLFCFLCFCSEFTRVTSSPSSFSIKHGDFIRDKEGEVLVSDGFNFVMGFFGSSSRYVGIWYYNFPGSQPIWVANRNKPINGNGGSFTISRNGNLVIIDGNKNQIWSTNVSVTHNNNKNNNSEAVLRDDGNLVLSNGTGVVWESFENPSDTYVPGMKVPVNGKKKSFFFTSWKSTTDPSEGNHTMGVDPQGLPPQIVVWEGDRRKWRSGYWDGRVFNGVDMTGSFLHGFVLNWDNGERCLVYNDNEFKVNGTSSVRFQIGWDGIEREFIWDENVKRWVEIQQGPHNQCEFYNYCGDFGVCDLSVSGSAICRCLQGFEQKDKKNWSSGCKRITPLKGDQKNGNDTQVNNVGDDGFLESICMKLPDFANVVDTKDCEGTCLGNASCTAYAVVVGIGCMIWYGDLVDVQHFERGGIGNTLQIRLAHSDLGDGGKNKRIMIVIISTVLAGLICLGIIVCLVWRYKRKLKVLPTVSSVSCCKNNDVLPLFDARKSREISAEISGPVELGLEGNQLSGAELPFYNFSCMSVATNNFSEENKLGQGGFGPVYKGKLPSGEEIAVKRLSRRSVQGLEEFKTEMMLIAKLQHRNLVRLMGCSIQGDEKLLVYEFMPNKSLDCFLFDPIKQTQLDWARRYEIIEGIARGLLYLHRDARLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTARVVGTYGYMSPEYAMEGLFSVKSDVYSFGILLLEILSGRRNTSFRHSDDSSLIGYAWNLWNDRRAMELVDACIRDSSPKNKILRCIQIGMLCVQDSAAQRPNMSNVVLMLESEAKTLPIPTQPLITSMRSEDREFHMDGLDVSNDLTVTMMIGR 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04193 860 SMART ntp_6 365 437 IPR003609 -
Tsu08g04193 860 CDD B_lectin 52 164 IPR001480 -
Tsu08g04193 860 ProSiteProfiles Bulb-type lectin domain profile. 38 163 IPR001480 -
Tsu08g04193 860 Gene3D Phosphorylase Kinase; domain 1 522 621 - -
Tsu08g04193 860 Gene3D - 38 161 IPR036426 -
Tsu08g04193 860 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 860 - -
Tsu08g04193 860 Pfam Protein tyrosine and serine/threonine kinase 549 814 IPR001245 GO:0004672|GO:0006468
Tsu08g04193 860 Gene3D Transferase(Phosphotransferase) domain 1 622 825 - -
Tsu08g04193 860 CDD STKc_IRAK 552 817 - -
Tsu08g04193 860 CDD PAN_AP_plant 363 438 - -
Tsu08g04193 860 ProSiteProfiles PAN/Apple domain profile. 365 428 IPR003609 -
Tsu08g04193 860 Pfam PAN-like domain 366 421 IPR003609 -
Tsu08g04193 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 667 679 IPR008271 GO:0004672|GO:0006468
Tsu08g04193 860 ProSiteProfiles EGF-like domain profile. 300 338 IPR000742 -
Tsu08g04193 860 PIRSF SRK 9 860 IPR024171 GO:0004674
Tsu08g04193 860 SMART serkin_6 546 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04193 860 SUPERFAMILY Protein kinase-like (PK-like) 532 839 IPR011009 -
Tsu08g04193 860 SMART blect_4 46 164 IPR001480 -
Tsu08g04193 860 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 1 860 - -
Tsu08g04193 860 Pfam S-locus glycoprotein domain 222 335 IPR000858 GO:0048544
Tsu08g04193 860 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 194 IPR036426 -
Tsu08g04193 860 Pfam D-mannose binding lectin 87 189 IPR001480 -
Tsu08g04193 860 ProSiteProfiles Protein kinase domain profile. 546 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04193 Tsu-Chr8 60139874 60143346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04193 523 829 Receptor kinase-like Gene Family AT4G23140 59.236 4.35e-130 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g04193 PK_Tyr_Ser-Thr 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04193 - - aprc:113869342 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01783 02 15980196 15984003 Tsu08g04193 08 60139874 60143346 PCT
Tsu08g04193 08 60139874 60143346 Tsu02g01778 02 15956656 15962170 PCT