Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04190 ATGATAATTAGCACCAACAAAAAAACAGGGCAAAAAGTAAAATTGACTTCTTGGAGAACGCCTTCTGATCCAGCTATAGGAAACTTCTCTAATGGCCTTGAGCGTCTCAATGCTCCAGAATTTTTTATATGGAACAACACAAAACCTTATTGGCGCTCGGGTCCATGGAATGGTCAAAAGTTTATCGGTTTACGTAGTGATTTGGTGTATGCTTCATCATATCTAAATGGATTCAACGTTGCAAGGGAAGATAATGGAAGTCTTGTTGAGTCTACGTATACACTCATTAATAGTTCTTACTTTGCAACCATGGTGGTGACTTATGAAGGCAAGATGGTTTACAGTTTATGGATCAATCGGTATCAAGTTAGCAATGGTGTTGCTCAAGAAAGTGAATGTGATGTTTATGGTTTTTGTGGTCTTAATGGAAGTTgcaatttcaaaaaatttccaatatGTACATGTTTGAAAGGTTTTGAGCCGAAAAACGCGGATGAATGGAATAAACAAAATTGGACTAGTGGTTGCGTGAGAAGCGCATCAGCACTCCGGTGTGAATTAGGTGGTGAAAAAGATGGATTTATGAAACTAGAGATGACAAAAGTACCAGATTTTGTACAACAATCATATCTTTCAGTTGATGCATGTAGAAATCAGTGCTTGAATGATTGTAATTGCACAGCTTATGGATTTGATGATGTAATTAACTGCTTGACTTGGAGTGGCAATTTAATTGACATAGTTAGATTTTCAAGTGGAGGTATTGATCTTTACATACGGGTACCTAATTCAGAACTTGATGGGAAGAGAAATGTTATAAAAATCATCATATCTATGGTGATAGTGGGagcaattatttttattacttctACTTATTTCTTATGGTCGCGGGCTTCAAAACGTTCAGAGAGCCAAAATGCAAATGTGAAACAAGTCAAAATGGAGGACCTTCCTTTATTTGAATTCCAGAAAATTTCAACTgcaacaaataatttttgtccATCTAATAAGATTGGTCAAGGTGGTTTTGGTTTAGTGTACAAGgGAGAATTGCTAGATGGACTAAAAATAGCAGTGAAAAGACTTTCAACAACTTCAGGACAAGGGATAGAAGAATTTATGAACGAAGTGATTGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGCTGCTGCATTGAAGGGGAAGAAAAAATGTTGGTCTATGAGTATATGCCTAACAACAGCTTAGATTATTATCTATTTGACTCGGTAAAAAAGAAGGTTTTAGATTGGAAAAAACGCTTATACATAATTGAGGGGATCTCTCGAGGACTGGTTTATCTTCATAGAGATTCAAGATTAAGAATAATACACAGAGACCTAAAGCCAAGTAATATCTTGTTGGATGAAGAACTGAATCCAAAAATATCAGATTTTGGCACGGCCAGAATCTTTGGTAGCACCGAAAACGAGGGCAGTACAAAAAGGATCGTCGGAACATACGGATACATGTCTCCAGAATATGTAATGGGAGGATTATTTTCAGAGAAATCAGATGTGTTTAGCTTTGGAGTTTTGCTCCTCGAGATAATAAGTGGTAGGAAAAACACAAGTTTCCATAATCATGAGCAAGCATTCAGTCTCTTAGGATATgCATGGAAACTGTGGAATGAAGAGGAGATTGTAACTTTGATAGATCCAGAAATATGTAATCCAGATTATGTAGATGACATTTTGAGATGTATACATATTGGACTTCTTTGTGTGCAAGAAATTGCAAAGGAGAGACCTACTATGGCAACAGTTGTTTCAATGCTTAATAGTGAGATTGTTCAATTTCCTCGTCCATTTCAACCTGCATTTATTCTAAGGCGGACTGAACATAGAGGAGACATAGATCAACAATGTCACAACTTAAATTCTTTGAACAATGTTACTGTCACAAGCTTGCAAGGCAGATAG 1953 0.3554 MIISTNKKTGQKVKLTSWRTPSDPAIGNFSNGLERLNAPEFFIWNNTKPYWRSGPWNGQKFIGLRSDLVYASSYLNGFNVAREDNGSLVESTYTLINSSYFATMVVTYEGKMVYSLWINRYQVSNGVAQESECDVYGFCGLNGSCNFKKFPICTCLKGFEPKNADEWNKQNWTSGCVRSASALRCELGGEKDGFMKLEMTKVPDFVQQSYLSVDACRNQCLNDCNCTAYGFDDVINCLTWSGNLIDIVRFSSGGIDLYIRVPNSELDGKRNVIKIIISMVIVGAIIFITSTYFLWSRASKRSESQNANVKQVKMEDLPLFEFQKISTATNNFCPSNKIGQGGFGLVYKGELLDGLKIAVKRLSTTSGQGIEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDYYLFDSVKKKVLDWKKRLYIIEGISRGLVYLHRDSRLRIIHRDLKPSNILLDEELNPKISDFGTARIFGSTENEGSTKRIVGTYGYMSPEYVMGGLFSEKSDVFSFGVLLLEIISGRKNTSFHNHEQAFSLLGYAWKLWNEEEIVTLIDPEICNPDYVDDILRCIHIGLLCVQEIAKERPTMATVVSMLNSEIVQFPRPFQPAFILRRTEHRGDIDQQCHNLNSLNNVTVTSLQGR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04190 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Tsu08g04190 650 CDD PAN_AP_plant 183 262 - -
Tsu08g04190 650 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Tsu08g04190 650 SMART serkin_6 332 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04190 650 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 649 - -
Tsu08g04190 650 Gene3D Transferase(Phosphotransferase) domain 1 408 610 - -
Tsu08g04190 650 ProSiteProfiles PAN/Apple domain profile. 185 262 IPR003609 -
Tsu08g04190 650 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Tsu08g04190 650 SUPERFAMILY Protein kinase-like (PK-like) 311 603 IPR011009 -
Tsu08g04190 650 Pfam Protein tyrosine and serine/threonine kinase 336 603 IPR001245 GO:0004672|GO:0006468
Tsu08g04190 650 ProSiteProfiles Protein kinase domain profile. 332 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04190 650 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 1 649 - -
Tsu08g04190 650 CDD STKc_IRAK 338 604 - -
Tsu08g04190 650 SMART ntp_6 189 261 IPR003609 -
Tsu08g04190 650 Pfam PAN-like domain 189 247 IPR003609 -
Tsu08g04190 650 Pfam S-locus glycoprotein domain 51 163 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04190 Tsu-Chr8 60086527 60089968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04190 259 628 Receptor kinase-like Gene Family AT4G05200 49.867 3.78e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g04190 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04190 - - gmx:112998788 893.649