Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04185 ATGGCACTCTTGCTGCAGCCGCCAGAGGTGGCGATCTTGGTCTTGCTACTGGCGCCGGATGAGGTGGTCTTGCACCTCAAGTTAGGTGGCGATCTTGGTCTTGCTGCTGGCGCCGGAGGAGGTGGTCTTGCACCTCAAGTTGGCAAAAGCAGATATGCTTGTTGGAGAGCCATCACTTATCGTCGTTGCCGTTATTACCCTTGCAAATTTCGGCACGACATATGTAGAAACTGGGTAGCTGGGAGATGTCTTGCCGGTGATTCTTGTCTTTTAGCCCATGGAGCTGCAGATCGATGTCCTGAATGGGCAGTGACCAAAAACTGTGTTAGAGGGGCTTCCTGCCCTTTTGTTCATGGTGGGGGTGTCCGGCGTCGTTATAGTCCCTTTTATCGCACGTCGCTCTGCCCCAGGATTTTTACCAGGGATAGCTGCAAGTTTGAGAGACGATGCAAGTTTCGGCACTCTCTCACAGAGTTTGAGAAGTGGACCTATGGTGATCCCAACACACCCTCTTAG 516 0.5252 MALLLQPPEVAILVLLLAPDEVVLHLKLGGDLGLAAGAGGGGLAPQVGKSRYACWRAITYRRCRYYPCKFRHDICRNWVAGRCLAGDSCLLAHGAADRCPEWAVTKNCVRGASCPFVHGGGVRRRYSPFYRTSLCPRIFTRDSCKFERRCKFRHSLTEFEKWTYGDPNTPS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04185 171 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 119 IPR000571 GO:0046872
Tsu08g04185 171 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Tsu08g04185 171 SMART c3hfinal6 96 120 IPR000571 GO:0046872
Tsu08g04185 171 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Tsu08g04185 171 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Tsu08g04185 171 Gene3D - 71 122 - -
Tsu08g04185 171 SUPERFAMILY CCCH zinc finger 127 161 IPR036855 GO:0046872
Tsu08g04185 171 Gene3D - 123 161 - -
Tsu08g04185 171 ProSiteProfiles Zinc finger C3H1-type profile. 98 121 IPR000571 GO:0046872
Tsu08g04185 171 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04185 99 161 C3H Transcription Factor Family AT1G68200 40.000 4.51e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g04185 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04185 K18753 - sspl:121776309 57.3806