Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04183 atgaagaaaaaatgtGAACTATGCAAAAATCCAGCAAAATTGTTCTGTGAATCAGATCAAGCAAGTCTTTGTTGGGAATGTGATGCAAAAGTTCATACTGCAAATTTCATAGTCACAAAACATCATAGGTTTCTTCTATGTCATATTTGTCAATCTTTAACACCTTGGCATGGCACTGGACCTAAGTTTGTTCCCACCATCTCACTTTGTAATCACTGTGTTTCTGTTTCCAACCATAACAATGATCACCGCGACGACGAAGATGACGATGATCAAGATGAGGATACTGAGGATGaagatgattttgatgatgaagaaaatcAAGTTGTTCCATGGAAATCTACACCTCCACCACCAGTTTCTTCTAGTTCTTCAAATAGTGCAACTAGTACTACAAATTATTAG 405 0.3432 MKKKCELCKNPAKLFCESDQASLCWECDAKVHTANFIVTKHHRFLLCHICQSLTPWHGTGPKFVPTISLCNHCVSVSNHNNDHRDDEDDDDQDEDTEDEDDFDDEENQVVPWKSTPPPPVSSSSSNSATSTTNY 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04183 134 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270
Tsu08g04183 134 CDD Bbox1_BBX-like 4 46 - -
Tsu08g04183 134 SMART bboxneu5 1 46 IPR000315 GO:0008270
Tsu08g04183 134 MobiDBLite consensus disorder prediction 78 134 - -
Tsu08g04183 134 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 1 127 - -
Tsu08g04183 134 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Tsu08g04183 134 MobiDBLite consensus disorder prediction 86 106 - -
Tsu08g04183 134 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 127 - -
Tsu08g04183 134 MobiDBLite consensus disorder prediction 119 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04183 Tsu-Chr8 60004638 60005042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04183 1 109 C2C2-CO-like Transcription Factor Family AT4G27310 47.706 1.00e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu08g04183 zf-B_box 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04183 - - cam:101492786 189.504