Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04175 atgggGAAAAAATCAACGACGGAGGAAGTCAAAGTGGAAATTCCGCCGGATAATCTCCGGTGTAGCCGCACCGACGGACGACAATGGCGGTGCAAAAGAAGAGCGATGGAAAACGTGAAATTATGCGAGGCTCATTATCTTCAAGGAAAAATTCGGCAGAACAAAGAGAAGGTTCCAGAATCACTGAAGCTTCAAAGAaacatgaagatgaagaagagaaagaaaaacgaCGTCGTTGAAATTAggtcaaagaagaagaagaaaaagaagaatggtGGTGATGTACAATTGGAGTTGATAAGGATGGTGTTACAGAGAGAggttgaaaagaagaagaagatgaagatgaacaaCAACATGGATGAAGAATCTGAATTGCAGCATTATAGTGAAGGAGAATTGAGAAAAGAATTACCTAATGGGGTTATGGAAATTGCTCCTGCTTCAACATCTTGTGATGTTGATTTTCACTGTaatggtaaatcaattgttaaTCCACGTTACTTCAGGTCCAAGAATGTTGATAGAAGGGTCAATTTTGATCATTTGcagGTTATGAAGAAGGGGAAGAGGAAGAAGTGTCATTGGTGTCAGAGTAGTGATTCTTTGAATCTGATTAAGTGTTCTAATTGCCAGCAAGTGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTCGAAACTCAAAATGAGGTTAAGATGGCGTGTCCAGTTTGTCGAGGAACTTGCACATGTAAAGATTGCCGTGCAAGTCAGTGTAAGGACCGTGAAAGTAAGGATTATTTGGCTGGTACTAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTTTGCTCCTTCCTGTACTGAAACAAATAAGCGAAGACCAGCATACAGAGCTAGAAACAGAAGCAAAAAATACAGGAAAAAATATTTCTGATATTCTCATCAAGCAGGTCGAATTTGGCTGCAATGAGAAAAATTGctgCAACTATTGCAAAACACCCATTCTGAATCTTCACAGAAGCTGCTTTAGTTGTTCCTACAGCCTTTGTTTAAGATGTTGCCAGACATTAAGTCAAGGAAGCCCCTTTGAGCATATACATTCTTCAGCGTCCAACTTACCTGACAAAATGGACGATTGCATTGCTGATGAAAGTTGCCTTTCGGATGATAAGACCATTTCTAGCGACAATGTAACTGATACTTCATTGTTACCGGATTGGACTGGTTGTATTGGTACTACTGACAGTGTATCATGCCCTCCAACAGAGCTAGGTGGTTGCGGTAATAGCCACCTTGACTTGAGATGTGTTTTTCCCTTAAGCTGGATCGAAGAATTGGAAGCTAAGGCGGAAGAAATAGTTTGCAGCTATGACGTTCCTGAAATGTTGGATAAAAATTCAACTTGCCCACTTTGTATTGACAAAGATCATAAAACTAAGCAATCGAAAGAAGCTGCTCGAAGAGAAGATTCTGATGACAATGGCTTATTTTATCCTACAGTTTTCGACATCAGTTGTGATCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTACTAGTGCGAGACGTGCTTCGAAGTACAAAGACCCTCAGTTGGGATCCTCTGACCATGTTCTGTGCTTATCTCGAGAGGAGCATTACAAGATATGAGCATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAGACAGGATTTTACTGGGTCTCTTAAATGTCAACCTCGGAAAAATGATTGGCATGAGATGCTGAAACTAAATGGATGGCTATCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGGTGCTCTTCCAATTCAAGAATACATGAATCCCAGATATGGTCTTCTGAACTTAGCTGCATATATGAAAGATGGGAGTGCAAAACGCGACAAAGGTCCGTATGTCTATATTTCTCATGGCTGCGCTGACAACGAAGCTTATTCCGTGCTAAATCTCTCTTATGAACCATATGATGCGGTTAATATTATGGCACATGCCTCAGATGCTCCTCTCTCTACGGAACATCTTACTAAGATAACCAAGTTATTGAAAAAGCACCGAACTCTGTGTCAAAGGGGGTCGCCAAAGGTTACTACCGAGCATGCAGAAGATATGGAGCTAAATGAACCAGAAAGCATTGCAAGGGAAGGAACTGACTTTTACAGGAGAGTCAATAGAACGTCTTACATCTCTACTGAAGTCAAAACAATAGCTAGTCAGAGTTTAGATAACAATACTTCCAGCAATGGAGAATGCCGTTCTGGTTCTGATACTGAAAAGGCGCAAAGCTTCTTATCTTTCCAGAAGGCAGTTCGGAGCCCTGACATGTATTCTGTTGCTCAGTGGGATGTCTTCCGAAGACAGGATGTACCGAAGCTTCTAGAATACCTTAAAAAGCACACTGATGAATTTTCTTATACCAACGAATATGGCAGTGAGAAGATCGTTCACCCAATTCTAGATCAGAGCATCTTTCTGGACACTACTCACAAAATGAGACTGAAGGAGGAATTCGATATCGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGGAATTTATGTCTCCTGAGAGTGTTGCCGAGTGTATCCAATTGACTGATGAGATCCATCTGCTTCCAGAAGACCATAAAGCAGAGGTAGATAAGCTAGAGGTGAAGAAAATGGCTCTTCATAGCGTGGAGACGGCAATAAAGGAAATACGCGAGCTCACTTCCAATCCAAAACATGATTGA 2844 0.3928 MGKKSTTEEVKVEIPPDNLRCSRTDGRQWRCKRRAMENVKLCEAHYLQGKIRQNKEKVPESLKLQRNMKMKKRKKNDVVEIRSKKKKKKKNGGDVQLELIRMVLQREVEKKKKMKMNNNMDEESELQHYSEGELRKELPNGVMEIAPASTSCDVDFHCNGKSIVNPRYFRSKNVDRRVNFDHLQVMKKGKRKKCHWCQSSDSLNLIKCSNCQQVFFCMDCIKQRYFETQNEVKMACPVCRGTCTCKDCRASQCKDRESKDYLAGTSRVDRILHFHYLVCLLLPVLKQISEDQHTELETEAKNTGKNISDILIKQVEFGCNEKNCCNYCKTPILNLHRSCFSCSYSLCLRCCQTLSQGSPFEHIHSSASNLPDKMDDCIADESCLSDDKTISSDNVTDTSLLPDWTGCIGTTDSVSCPPTELGGCGNSHLDLRCVFPLSWIEELEAKAEEIVCSYDVPEMLDKNSTCPLCIDKDHKTKQSKEAARREDSDDNGLFYPTVFDISCDHFEHFQKHWGKGHPVLVRDVLRSTKTLSWDPLTMFCAYLERSITRYEHNKDLLEACLDWWEVEINIRQDFTGSLKCQPRKNDWHEMLKLNGWLSSQLFKEQFPAHFAEVIGALPIQEYMNPRYGLLNLAAYMKDGSAKRDKGPYVYISHGCADNEAYSVLNLSYEPYDAVNIMAHASDAPLSTEHLTKITKLLKKHRTLCQRGSPKVTTEHAEDMELNEPESIAREGTDFYRRVNRTSYISTEVKTIASQSLDNNTSSNGECRSGSDTEKAQSFLSFQKAVRSPDMYSVAQWDVFRRQDVPKLLEYLKKHTDEFSYTNEYGSEKIVHPILDQSIFLDTTHKMRLKEEFDIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFMSPESVAECIQLTDEIHLLPEDHKAEVDKLEVKKMALHSVETAIKEIRELTSNPKHD 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04175 947 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 13 942 IPR045109 GO:0032454|GO:0033169
Tsu08g04175 947 SMART cupin_9 606 907 IPR003347 -
Tsu08g04175 947 ProSiteProfiles JmjC domain profile. 621 907 IPR003347 -
Tsu08g04175 947 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Tsu08g04175 947 ProSiteProfiles Zinc finger RING-type profile. 194 240 IPR001841 -
Tsu08g04175 947 SUPERFAMILY Clavaminate synthase-like 505 936 - -
Tsu08g04175 947 Pfam WRC 16 57 IPR014977 -
Tsu08g04175 947 PANTHER PROTEIN B160 13 942 - -
Tsu08g04175 947 Pfam JmjC domain, hydroxylase 789 888 IPR003347 -
Tsu08g04175 947 Gene3D Cupin 499 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04175 Tsu-Chr8 59899350 59904316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu08g04175 JmjC 7e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04175 K15601 - gmx:100799234 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01787 02 16013597 16019424 Tsu08g04175 08 59899350 59904316 PCT