Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04173 ATGGGAAGAACACCTTGTTGTGAGAAGAATAATGGTCTTAAAAAAGGACCATGGACAACTGAGGAGGATCAAAAACTCATTGATTACATTCAAAAACATGGTTATGGAAATTGGAGGACACTCCCAAAGAATGCTGGTTTGCAAAGATGTGGTAAAAGTTGTCGTCTACGTTGGACAAACTATCTCCGACCAGACATAAAACGTGGTCGATTTTCGTTTGAAGAGGAAGAGACTATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGATTACCAGGAAGGACGGACAACGAAATAAAGAACTACTGGAACACACACATTAGAAAAAGGCTTTTGAGAATGGGAATCGATCCAGTGACACATAGTCCTAGACTTGACTTATTGGACCTCTCTTCCTTTCTATGTTCACCTCAAATGAACAATTTCCAAAATCTCCTTAACATGCAACAACCTATGGTCATAAATCCTGAGCTTCTAAAGTTAGCTTCATCACTCTTCACAACCTCATCACATCAACAAGATTATAGTAATAATCAAAACCAACCCTTCAATCCtcaaatacaaaatcaaattccACTTTCAAATTTTGGTCAATTTCAAGACCAAGTTCAACAAGTACCTAATTCTAATGCCAATGTTTGTACCACCACATTTACTACCCCTTGTGTTTCATCATCATTGCCTAATGAATCACATTTATTTGAACCTAAAGTTGAAGCCTATACATCAAATTTCAATGACCTTAGTAATTACCAACAACATTTTGGTCATGATATTGAAAATTGGCATGAAAATGGGTTTGGTTTAAGTGACTTAAAAGAGGATTATGTCCCTCAATTATCAAGccataattattattatggtTCAGATAATCAAAATCTCATGTATcaaaattcaaaccaaattttatcAACACCATCATCTAGTACTCCAACACCTTTGAATTCAAACTCCACGTGTATTCTTGGGAGCAATACAGAAGATGAGAGAGAAAGTTATGACAGTTGTAATAGGTTGAATTTTGAAATCCCTTCACATATTTTAGAGTCCAATGATTTCATGTAA 1083 0.3435 MGRTPCCEKNNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSFLCSPQMNNFQNLLNMQQPMVINPELLKLASSLFTTSSHQQDYSNNQNQPFNPQIQNQIPLSNFGQFQDQVQQVPNSNANVCTTTFTTPCVSSSLPNESHLFEPKVEAYTSNFNDLSNYQQHFGHDIENWHENGFGLSDLKEDYVPQLSSHNYYYGSDNQNLMYQNSNQILSTPSSSTPTPLNSNSTCILGSNTEDERESYDSCNRLNFEIPSHILESNDFM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04173 360 SMART sant 67 115 IPR001005 -
Tsu08g04173 360 SMART sant 14 64 IPR001005 -
Tsu08g04173 360 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tsu08g04173 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu08g04173 360 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tsu08g04173 360 Gene3D - 70 117 - -
Tsu08g04173 360 Gene3D - 14 67 - -
Tsu08g04173 360 PANTHER TRANSCRIPTION FACTOR MYB41 1 353 - -
Tsu08g04173 360 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tsu08g04173 360 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Tsu08g04173 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu08g04173 360 MobiDBLite consensus disorder prediction 307 327 - -
Tsu08g04173 360 CDD SANT 70 113 IPR001005 -
Tsu08g04173 360 CDD SANT 17 62 IPR001005 -
Tsu08g04173 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tsu08g04173 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04173 Tsu-Chr8 59879352 59880706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04173 1 360 MYB Transcription Factor Family AT4G21440 51.036 7.00e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g04173 Myb_DNA-binding 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04173 K09422 - gmx:778071 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01789 02 16039238 16040593 Tsu08g04173 08 59879352 59880706 PCT