Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04169 atgtcaagtTTCGCTTTCTCTGAACGTCTTTCTAGAACTTTCCGTGACAATCGTAGAACCGCTACACTTGTTCTCCTCTGCACCGCCGTTAGTGGTGGCGGTTATTTGGCTTATGGTCAGTTAGCAGCATCGGAAGCGGTTACCGATAGGAAAAAAGTGGTGGTGTTGGGAACAGGATGGGCGGCAACAAGTTTTATGAAGAATCTGAATAGTCTGAAGTATGAAGTTCAAGTGGTTTCGCCTCGGAATTATTTTGCATTCACTCCATTGTTACCTAGTGTGACTTGCGGCACAGTTGAAGCGCGCAGTATTGTTGAACCTGTTCGCAATATTTTTAGGAAGAAAAAGGTGGACGTACAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCTGAAAATAAGAAAGTTTATTGTCGATCTAATGCAAACAATAATTTGGATGGGAAAGAAGAATTTGTCGTGGATTATGATTACCTAATCATCGGCGTGGGCGctcaagtcaacacatttaaCACACCAGGAGTGgtagaaaattgtcattttttgaAGGAAGTTGAAGATGCCCAGAAGATTAGAAGAACAGTTATTGACTGCTTTGAGAGAGCAAATTTGCCTGATGTTAGCGaggaagaaaagaagagaattCTTCATTTTGCTATTGTTGGAGGTGGGCCAACTGGAGTAGAGTTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATTTAGTCCATTTATATCCTGGGATaaaagatttagtaaaaattaCACTTCTAGAAGCCGGAAATCATCTTTTGAGCATGTTTGACAAAAGAATTACTGCTTTCGCTGAAGACAAGTTTCAAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTAGATGAGAAAGAAATTTCCACTAAAGAGCTGAATAATGGAGGAAAGATTACTGCAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGTCACAAATTGGTCAGGCTAGCAGACGTGCTCTAGCTACTGATGAATGGTTGAGAGTTGAAGGATGCAACAACGTATATGCACTCGGTGATTGTGCGACGATAAATCAGCGAAAAGTCATGGAAGATATTGAGGCGATCTTTAAGAAGGCTGACAAAGGCAATTCAGGAACGCTTACCGTCAAAGAATTTCAAGCGGTCATGGATGACATTTGCCAACGATACCCTCAGGTTGAGCTGTATCTGAAGAATAAACAGATGCGCAACATTGCTGATTTATTGAAGGAAGCTAAGGGAGATGTCCAAAAAGGATCAATTGAACTGAATATCGAAGAACTCAAAGCAGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTCCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGAACTTACCTAGCCAAATGTTTTAATCGGATGGAAGAGTGTGAGGAAAAACCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGTCATCGCTTCAAACCCTTCAGGTACAAGCACTTAGGACAGTTTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGTCACAGCAGTCAATGGTTGTGGTATTCTGTCTATGCAAGCAAGCAAGTTAGCTGGCGTACAAGGGCATTAGTAGTTACAGACTGGACCAGGCGTTTTATTTTTGGGAGGGACTCAAGTCGCATCTGA 1731 0.4102 MSSFAFSERLSRTFRDNRRTATLVLLCTAVSGGGYLAYGQLAASEAVTDRKKVVVLGTGWAATSFMKNLNSLKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVDVQFSEAECFKIDAENKKVYCRSNANNNLDGKEEFVVDYDYLIIGVGAQVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVHLYPGIKDLVKITLLEAGNHLLSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVDEKEISTKELNNGGKITAIPYGMAVWSTGIGTRPFIKDFMSQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIEAIFKKADKGNSGTLTVKEFQAVMDDICQRYPQVELYLKNKQMRNIADLLKEAKGDVQKGSIELNIEELKAALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEEKPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04169 576 PANTHER NAD(P)H DEHYDROGENASE B2 4 576 - -
Tsu08g04169 576 Gene3D - 422 575 - -
Tsu08g04169 576 Gene3D - 42 421 - -
Tsu08g04169 576 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Tsu08g04169 576 SUPERFAMILY EF-hand 367 463 IPR011992 -
Tsu08g04169 576 PANTHER NADH DEHYDROGENASE 4 576 IPR045024 GO:0003954|GO:0006116
Tsu08g04169 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 51 377 IPR023753 GO:0016491
Tsu08g04169 576 SUPERFAMILY FAD/NAD(P)-binding domain 51 269 IPR036188 -
Tsu08g04169 576 SUPERFAMILY FAD/NAD(P)-binding domain 217 371 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04169 Tsu-Chr8 59843423 59848182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04169 1 576 Chloroplast and Mitochondria Gene Families AT4G21490 72.213 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04169 K03885 - gmx:100797657 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01796 02 16155345 16159642 Tsu08g04169 08 59843423 59848182 PCT