Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04161 ATGCAACATTTTTGGCATAGTGACTGTGCTCTTTATTTGTTATCTGTATCTCAGCCATCTAACTTGCCGTGGCCACAACCTTTATCCTTTCAAAATCGTTTATCGGAGAGATATAGAGACATATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTGTTCAATTCAGCTTCTTCTTCTGACCAGCCTCCAGATGTGCACTCTCTAGGTgaattatcaaataattttgacaaaacttATGGCAATGAAAGGTTACCCACCTCATGCTTGGAAAAGAAAAACGAGGATTTGTCTGGAATATCAGCTAATTGGAATGCCAAATTTGGTTCAAGGGAAATGGTGCTTATGAATGGATTGAGGAATGAGGACAAATCAGGTTCGTGTTTAAATATGTGCCAACAGCCTCATTCTCTGAAGGAAGAATCATCTTCTCAACCATTTGGTTTATCAGTACCTTATTCATCCCCTAATGAAAGAAATGGTCAAATTGGGGTAACCGGAATTCATCCacaacaaactccacctcatcCAAGCAAACAATTTAGTGGCACTGTGCATTTAGCTCTTGACCCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAGTTGTTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGTTACAACAAATATCTATTGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACATTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCCAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCCGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCTATGCCACCTGATCAGGATAATGATGCTAGTAAGACTGGAAACGGACTTTCTGCACATGAAGTTGAATTGACTGATCCCAGTTCTTGGTCAAAAGTTGATAAGTCAGGATACATTGCAAAAGAAGCAATGGGGAGCAAATCTTTAATCTctagaaagagaaaaaacaacatATTGGGTTCCAAAAGTAAACGTCTAAAAATGGAAAATGAAGATATAATAGAATTGAAGATTACATGGCAAGAAGCTCAAGGACTGCTCCGCCCCCCTGCTAACCATGTTCCAAGTATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCGGTGCTTGGGAAGCCAACTATTTTCTCTACTGATAATATGGGTGAAAAGATTCAGTGGTCTCAATGTGAAGATTGTCTGAAGTGGCGTAAATTGCCAGCATGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTTACAGCAGAGCAACTTGAGAATTTGTTACCTCCTTGTAATTCAGCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGAGGCTCTCCAGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCAAGTGGAAAGGGTCCCAAACATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACACGTAAAAAGCTGCAGCAACATAATTCCCAACAATTGCCTTCACCCGAAATTTTGCTTGATGATGATTCCTTGCATAATAGTAATACTGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACTGTTCTGATGATGATCCTCACAGGACAAAATCATCCGTGTCTCCGTTCAAAGGCCAAATTGACCTCAATATCCAGCCGGAGCGAGAAGAAGAACTATCACCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCATGATGCTACTGAGATGTATCTCAAGcagcaacagcagcagcagAAGACTGTGTTAAACTCCGGAACTGGAGATTCCTCAGGTAGTCAGTCACAACAGGTAGGAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATTCATGGTAGCAGTAGTCATAATGCAGATAAGGAACATGTCCAGTCTTTGTCTATGAATGTGTAA 2400 0.4188 MQHFWHSDCALYLLSVSQPSNLPWPQPLSFQNRLSERYRDISAKSWSQLAGSGPVPWKQAPSLFNSASSSDQPPDVHSLGELSNNFDKTYGNERLPTSCLEKKNEDLSGISANWNAKFGSREMVLMNGLRNEDKSGSCLNMCQQPHSLKEESSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPPHPSKQFSGTVHLALDPSGEAQVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPPDQDNDASKTGNGLSAHEVELTDPSSWSKVDKSGYIAKEAMGSKSLISRKRKNNILGSKSKRLKMENEDIIELKITWQEAQGLLRPPANHVPSIVVIEGFEFEEYEDAPVLGKPTIFSTDNMGEKIQWSQCEDCLKWRKLPACALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGEALQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKLQQHNSQQLPSPEILLDDDSLHNSNTGDSSPNMNKEGNDCSDDDPHRTKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYLKQQQQQQKTVLNSGTGDSSGSQSQQVGDVVREEKLSNGVIHGSSSHNADKEHVQSLSMNV 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04161 799 MobiDBLite consensus disorder prediction 631 647 - -
Tsu08g04161 799 Pfam CW-type Zinc Finger 483 524 IPR011124 GO:0008270
Tsu08g04161 799 SMART B3_2 250 350 IPR003340 GO:0003677
Tsu08g04161 799 Pfam B3 DNA binding domain 250 349 IPR003340 GO:0003677
Tsu08g04161 799 Gene3D - 228 354 IPR015300 -
Tsu08g04161 799 ProSiteProfiles B3 DNA-binding domain profile. 250 351 IPR003340 GO:0003677
Tsu08g04161 799 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 119 750 - -
Tsu08g04161 799 SUPERFAMILY DNA-binding pseudobarrel domain 247 351 IPR015300 -
Tsu08g04161 799 MobiDBLite consensus disorder prediction 740 769 - -
Tsu08g04161 799 MobiDBLite consensus disorder prediction 777 799 - -
Tsu08g04161 799 CDD B3_DNA 248 349 IPR003340 GO:0003677
Tsu08g04161 799 MobiDBLite consensus disorder prediction 648 683 - -
Tsu08g04161 799 Coils Coil 634 654 - -
Tsu08g04161 799 MobiDBLite consensus disorder prediction 630 728 - -
Tsu08g04161 799 MobiDBLite consensus disorder prediction 61 84 - -
Tsu08g04161 799 MobiDBLite consensus disorder prediction 740 799 - -
Tsu08g04161 799 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 119 750 - -
Tsu08g04161 799 MobiDBLite consensus disorder prediction 351 377 - -
Tsu08g04161 799 ProSiteProfiles Zinc finger CW-type profile. 477 527 IPR011124 GO:0008270
Tsu08g04161 799 Gene3D - 481 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04161 Tsu-Chr8 59765080 59773998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04161 156 635 B3 DNA Binding Superfamily AT4G32010 52.653 1.07e-166 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu08g04161 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04161 - - gmx:100782114 1334.7