LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g04149	ATGAAGTACAATCCACGAGTCTCCAGCAGCCGCCGCAAGAGTCGCAAGGCTCATTTCACGGCACCGTCAAGTGTCCGCCGTGTTCTGATGAGCGCACCGCTCTCCGCCGATCTCCGATCCAAGTACAACGTCCGTTCAATGCCAGTTCGCAAAGACGATGAAGTTCAGGTCGTTCGTGGTCTCTACAAAGGTCGTGAAGGTAAGGTTACTCAAGTTTACCGTCGCAAATGGGTGATTCACATCGAACGTATCACAAGGGAGAAAGTGAACGGATCCACCGTCAATGTTGGTGTTAATCCATCGAAGGTTGTTATCACTAAGCTGAGATTGGATAAGGATAGGAAATCGCTTCTTGATAGGAAGGCCAAGGGTCGTGCTGCTGCTGATAAGGAGAAGGGAACTAAGTTTGCTACTGAGGATATTATGCAGAATGTTGATTAG	441	0.4875	MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADLRSKYNVRSMPVRKDDEVQVVRGLYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGVNPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFATEDIMQNVD	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g04149	146	Pfam	KOW motif	51	82	IPR005824	-
	Tsu08g04149	146	SUPERFAMILY	Translation proteins SH3-like domain	8	125	IPR008991	-
	Tsu08g04149	146	MobiDBLite	consensus disorder prediction	1	20	-	-
	Tsu08g04149	146	ProSitePatterns	Ribosomal protein L24 signature.	52	69	IPR005825	GO:0003735\|GO:0005840\|GO:0006412
	Tsu08g04149	146	TIGRFAM	rplX_A_E: ribosomal protein uL24	8	122	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Tsu08g04149	146	CDD	KOW_RPL26	52	105	IPR041988	GO:0003723
	Tsu08g04149	146	Pfam	Ribosomal proteins L26 eukaryotic, L24P archaeal	8	121	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Tsu08g04149	146	Gene3D	-	1	144	IPR014722	-
	Tsu08g04149	146	PANTHER	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	1	146	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Tsu08g04149	146	SMART	kow_9	48	75	IPR005824	-
	Tsu08g04149	146	PANTHER	60S RIBOSOMAL PROTEIN L26-1	1	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g04149	Tsu-Chr8	59688546	59689191	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g04149	1	146	Cytoplasmic Ribosomal Protein Gene Family	AT3G49910	86.986	9.40e-94	266

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g04149	K02898		-	pvy:116134852	236.113