Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04141 ATGGGGACGGAGGTGATGGGTAGATGGGGGACATGGGAGGAGCTCCTCCTTGGTGGGGCGGTTCTCCGCCACGGGACTCGTGACTGGAACGTCGTTGCCGCTGAGCTCCGAGCACGAACCGTTTATCCTTACACTTTTACCCCTGAgGTCTGTAAAGCCAAGTATGAAGACTTGCAACAACGGTATTCTGGGAGCACGGTTTGGTTTGAGGAGCTTAAGAAAACAAGAGTGGCAGAGCTGAAGAAAGCTTTGGAGAGATCTGAAGATTCTATTGGGTCTCTTGAATCGAAGCTTGAAGTCCTGAAGGCCGAGAAGACTGAGAAAAACGATAATTGTGAAAATGGTCTAGAAAGTCCGGTATCACATGTACCATCCAAGAAATTGAAGATATTGGAGAGAGTTGAATCTTCCACTATAGAGACATCAAAGGATAGGCCATCTTCCGGGAGTTTCACACATGAAACGGGGACAAACTGGTCTCCTGAATCTCAGGTTCCAGCTAGGTCTGCCGATGATAATGAGACTAAGCCGGAAGTTTCACAATCTATTGAGCAGGCTAAAATTTCGAACCTAGATAATTTGGCACTTGCTTTATATGACGGACAGTTAGGATGTTGTAAAAAACGGAGAGGGAAGAGAAAAAGGAAGGATTGTAGTAGAAATATTAAGGAAGCAGCTAGTATAGGAGAAAGTGACTTATTAGATTCAGCTGATGTTGTTTCTTGGTGTAAAGAAAGTTCTACCAGTAACTGTGGTGAAGTTGCCAAATCTTCTGTTGATGTAGTTGATCGGAAAAATAAGAATTCGAAAAAGCGTGGCGTGGAAGATATGGTTAAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCATCTGCCTTCCGTCGAAGACTTGATAGTCAGAAAAGAGGAAGGTACAAGAAAATTATCCGGCGGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACCAAACAATTAAATCAACCGTAGAACTATTCCGAGACTTGTTGCTACTCACCAACAATGCATTAGTCTTCTACTCGAAGAACACTCGCGAATATAAAAATGCTCTTCTTCTAAGAGACATAGTCATCAAAAAAATGAGGGAGAGTTTCAAGGATAGTAATAGTATTGTTAGTAGCAGCAAAGTCAGCAAAATCGCCGAACCTGATGAGTCTATGAAATTACCAGTGCATAATCTTCATGTGAAACCAAGAAGTGTTAGACCAGGTAACAAAAAAACCATTGCAAAGGCTGGTGGTGGCAACAACTCTGCATCCGGGACGTCACAAGGAGCTAAGAAGCCGATTAAAGCTGATTCTTCGCCTTCCGTGGAATCCTTAAATGtcacaaaaaaaacttttggtAGACCGAAAAGAGTTGAGCGTGCGACTTCAGATCAAAAGACGACAACACCaacaaaaggaaagaaaagagtTAGAACAAAGTCATAG 1458 0.4143 MGTEVMGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTVYPYTFTPEVCKAKYEDLQQRYSGSTVWFEELKKTRVAELKKALERSEDSIGSLESKLEVLKAEKTEKNDNCENGLESPVSHVPSKKLKILERVESSTIETSKDRPSSGSFTHETGTNWSPESQVPARSADDNETKPEVSQSIEQAKISNLDNLALALYDGQLGCCKKRRGKRKRKDCSRNIKEAASIGESDLLDSADVVSWCKESSTSNCGEVAKSSVDVVDRKNKNSKKRGVEDMVKILDSIFETKGASAFRRRLDSQKRGRYKKIIRRHMDFDTIRSRISNQTIKSTVELFRDLLLLTNNALVFYSKNTREYKNALLLRDIVIKKMRESFKDSNSIVSSSKVSKIAEPDESMKLPVHNLHVKPRSVRPGNKKTIAKAGGGNNSASGTSQGAKKPIKADSSPSVESLNVTKKTFGRPKRVERATSDQKTTTPTKGKKRVRTKS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04141 485 MobiDBLite consensus disorder prediction 384 485 - -
Tsu08g04141 485 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 484 - -
Tsu08g04141 485 Gene3D - 262 379 IPR036427 GO:0005515
Tsu08g04141 485 MobiDBLite consensus disorder prediction 134 181 - -
Tsu08g04141 485 Pfam Bromodomain 278 358 IPR001487 GO:0005515
Tsu08g04141 485 PANTHER BROMODOMAIN PROTEIN 1 484 - -
Tsu08g04141 485 MobiDBLite consensus disorder prediction 141 168 - -
Tsu08g04141 485 SUPERFAMILY Bromodomain 263 376 IPR036427 GO:0005515
Tsu08g04141 485 SMART bromo_6 270 374 IPR001487 GO:0005515
Tsu08g04141 485 Coils Coil 77 111 - -
Tsu08g04141 485 ProSiteProfiles Bromodomain profile. 285 355 IPR001487 GO:0005515
Tsu08g04141 485 CDD Bromodomain 275 369 - -
Tsu08g04141 485 MobiDBLite consensus disorder prediction 419 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04141 Tsu-Chr8 59614573 59619652 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu08g04141 Bromodomain 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04141 - - gmx:100793951 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01857 02 17275174 17279986 Tsu08g04141 08 59614573 59619652 PCT