Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04139 ATGGGGATTTTGAATTTGGAGTTGCATGTTCAAATCTTTGTCACTACCATGATCGTCATTCTACTTGGAACTTTCTGTGTTGCAGATACTGACCCTGTTGATGTTGCTGCAATCAATAGTCTATATGTTGCTATGCACTCACCACCTCTTCAAGGGTGGAAGCCGGTGGGAGGGGATCCATGTTTCGACCATTGGCAAGGTGTGGATTGTGTCTTCTCCAACATAACCGCCATACGACTAGCAGGCTTGAATTTGGGTGGAGAGCTTGGCAGTAATTTGGATTTCCCATCCATTATAGACATTGATCTTAGCAACAACCACATAGGAGGTGCCATTCCATTCACTTTACCGCCTACTTTGAGGACCTTGTATCTGTCGGGAAATCGGTTAAATGGAAGCATTCCAGATGCGTTATCCTTATTAACTCAATTGTCAAATTTGGATTTGGCCAATAATAACTTGACTGGTCAGCTGCCTTCCTCAATGGGGAGTTTATCGTCTCTTACAACATTACTTTTGCAGAACAATCGACTTGTAGGGACCCTTTTTGTTTTGCAGGACCTTCCTCTTCAGGATTTGGATATAGAGAATAATTTATTCTCTGGCCCAATTCCTCCAAATTTGTTGAGCATCGCTAATTTCAGAAAAGATGGGAATCCATTTAATACTACTATTATTCCATCTCCGCCTGTTGCTGCAGCCCCTTTGCATGTACCTGTCGGGCGATCCCCTGAAGAATCACCTTGGCATGTGGCATATAGTCCTTCTGACTTTGCAGGACCGATGCCTAGAAATGTTAAGAAGTCTTTCCTAGCTAATCATAACGTTTGGTTTGCTGGTGCTGGTTTATTAGTATTTATCGCTCTGggaatttgtatttttatggtGTTTTGCTGCAAGAGAGAgccaaaaaatgaaaattctcAGAACCTTGATGTGGAGGGGTTTCCACAAACTTTGCATAAACCTACTCGCAACGGTGCTGTTTATGAAGCAACTAATCAAGATGGAAAAGCTGAGAAAACACCGCGTTTAAATGAAGTGCCACATAGAAGAACAAATTCGATTCCAAAGGCTCAGGATGAacaagaagtatatgtcaacaGACTCAACACAATATCTTCAACATCAGAATACACTAATGGTTCCCAACATCCACTGCTGCAGCCACCACCACATTCTTTGCCAATCATTCCCGGTGAGAAGGTCATCGTCAATCCAGCTGCAACTACCAAAGCAGCCGAAAGGCAAGTTATGCCAAGTTCAGTCAAAATGTATACTGTTGCATCACTTCAGCAATATACAAATAGCTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTTGGTTCTGTTTACAGGGCCGAGCTCCCTGATGGAAAGCTGTTGGCAGTGAAGAAACTGGATGCTACCACTTTCAAGGACCAGAATGATGAACAGTTTCTTCAATTGGTATCCAGCATCTCCAAAATTCAGCATGCTAATATCGCAAAGCTTGTGGGCTACTGTACTGAGTATAACCAACGATTACTTATATATGAGTATTGTAATAATGGAACCCTATATGACGCACTTCATGGTGATGACGAGCATTGTATTAAATTTCCATGGAATGCACGCATTAAAGTCGCACTTGGAGCTGCAAGGGCTTTAGAGTATCTGCATGAAAACTTTCGGCCACCTATTGTTCACCGAAATTTTAGATCTGCTAATGTTCTCCTGAATGAAAAGTCGGAAGTGTGTGTTTCTGATTGTGGATTAGGTCACTTGCTATCTTCTGGCACTGTTGGTCAGTTATCTGGACGCCTCCTTACCGCTCACGGTTACAGTGCTCCAGAATTTGAGTTGGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGAGTCGTAATGCTAGAACTCCTCACTGGAAGAAAATCCTATGACAGGTCACGGCCTCGTGGAGAGCAATTTTTGGTCAGATGGGCAATTCCTCAACTTCATGACATTGATGCATTGTCGAAAATGGTTGATCCTCGCTTAAATGGATCATATTCTATGAAGTCATTATCACGCTTTGCAGATATCGTTTCTTCATGTATTCAGcGTGAACCCGAATTCCGGCCAGCTATGTCAGAAATTGTTCAGGATCTCTTGCTAACAATGTAG 2151 0.4142 MGILNLELHVQIFVTTMIVILLGTFCVADTDPVDVAAINSLYVAMHSPPLQGWKPVGGDPCFDHWQGVDCVFSNITAIRLAGLNLGGELGSNLDFPSIIDIDLSNNHIGGAIPFTLPPTLRTLYLSGNRLNGSIPDALSLLTQLSNLDLANNNLTGQLPSSMGSLSSLTTLLLQNNRLVGTLFVLQDLPLQDLDIENNLFSGPIPPNLLSIANFRKDGNPFNTTIIPSPPVAAAPLHVPVGRSPEESPWHVAYSPSDFAGPMPRNVKKSFLANHNVWFAGAGLLVFIALGICIFMVFCCKREPKNENSQNLDVEGFPQTLHKPTRNGAVYEATNQDGKAEKTPRLNEVPHRRTNSIPKAQDEQEVYVNRLNTISSTSEYTNGSQHPLLQPPPHSLPIIPGEKVIVNPAATTKAAERQVMPSSVKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDATTFKDQNDEQFLQLVSSISKIQHANIAKLVGYCTEYNQRLLIYEYCNNGTLYDALHGDDEHCIKFPWNARIKVALGAARALEYLHENFRPPIVHRNFRSANVLLNEKSEVCVSDCGLGHLLSSGTVGQLSGRLLTAHGYSAPEFELGSYTQQSDVFSFGVVMLELLTGRKSYDRSRPRGEQFLVRWAIPQLHDIDALSKMVDPRLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04139 716 SUPERFAMILY Protein kinase-like (PK-like) 418 713 IPR011009 -
Tsu08g04139 716 PANTHER LEUCINE RICH REPEAT KINASE 2 141 713 - -
Tsu08g04139 716 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 141 713 - -
Tsu08g04139 716 Gene3D Transferase(Phosphotransferase) domain 1 516 714 - -
Tsu08g04139 716 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Tsu08g04139 716 ProSiteProfiles Protein kinase domain profile. 438 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04139 716 Gene3D Ribonuclease Inhibitor 35 230 IPR032675 -
Tsu08g04139 716 PANTHER LEUCINE RICH REPEAT KINASE 2 10 154 - -
Tsu08g04139 716 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 10 154 - -
Tsu08g04139 716 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Tsu08g04139 716 Gene3D Phosphorylase Kinase; domain 1 401 515 - -
Tsu08g04139 716 SUPERFAMILY L domain-like 32 213 - -
Tsu08g04139 716 Pfam Protein tyrosine and serine/threonine kinase 441 712 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04139 Tsu-Chr8 59586496 59592567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04139 20 713 Strubbelig Receptor Gene Family AT4G03390 49.600 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Tsu08g04139 PK_Tyr_Ser-Thr 7.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04139 - - gmx:100793423 989.949