Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04132 ATGACCATGGCGGATGATGGATTTCAATTACCACTGTTTGGTGATGATGGAGATGAATCTGATGATGAAAAACTTGCAATGGATATTGAATCGTTTCTTAGCGTTCTTGATGAAGATTGTGTTCCCTCTGAGAGTAGTCACGAGGATTCTTCATTGAAAGACGTTTCACCTGGAGAATCTGCGATccatgataatttttttcttcaaaatgGGAGTTCCGTGCTTGACTCTGAACATGAAAACCAGGGACCTTCATCACCAAATGCTTTTGCTGGTGGTTACAGGGACTCGttctctgtttttgaaagtgaTGAAACTTGCTATACAGAAAGAGTAGGAGTTTCTGAACATGAGATGTCTTCTTATAGTGTGGACACAAATTTTGCCGAggcaaattcaaattcaaataccGCAACTGTATGTCGAGATAATTTGAACCTGAGTCTGTGGAAGGGTGACAATAATAGCCAAATCAAGCATGTGGGAGATGATGTAGAATCTGAATATGCTTCACACAGCTCTATCATTGAGAATGTTGATGGAACTTTGGAAGATTATGAAACAGCTTTGAAAGACATTATTGGAGTTCCTAGGCAGCAGGAAAATGACTCCTGTACATCTTTTGAAATGCCGTTTGTGGATGTTGACAGGCCTACATATTTTGGAACTTCAACTGATTCTACTATTTGTCAAGGTTCGGATGTTCATAGTGATTATAGTGGCTACTATCAATCTTTGAATTGTTACCAGGGTCAAGATGTTAGACCTGTTGTTACCGACAGTTCTGGTTATTTGCCTAATGGTGTTTGTCCTGAATTCTGGAAAAATGAAGAGATGATGGGGAATCTGAAGGTTGAAAAATCGGAGTTCTTAACTAACACTACAAATATGACTGGCGGTATGCATTTGAGCTCTATTGGTCGGATCCCTTTTCAGGATAATCAATTTATGCCAGCAGATAGTGATTATCCTTCATTTTTTCCTGGCGATGTTGTATTTGAAGACAGTGAATCAGTGCAACAATCATCTTGTGCTCCATATATTTCGAGTGAATGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGTCATGCCTTACCAAAATACTTTTCAGAATAACAATGCCAAGTTAAATGCTGTTTTAGAGGTGAAACAATCACCCTGTGTTTTCCCTACCAATGGATGTCAGAATTATGATTTTTTCAGGGGTGAGGATAGGGCTACAATCGTGAAAACTGAGAATGCCAATTATTATCAAGATTTTGTTGATAAAACTGCTAATAAATTTCCAGTAAACATTGGAAATTTGAATTCCAGATCCTTAAACAATTCTCTACCTGTTGCCCGGGCATCAATTACCAATGGGAAGCAGTACAATTGTGGTATGAGTGACATAGATAGTAAACCAAGTGAATATAAAAGTATTGATTCTCAACTGTCCAAAAGAAGTACCGAGGGATCCAATGACGAAGATGATTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCCGAACTCGGAAATTCCCTTAATATGGCACAATCTTCTAGATTTGATTATACCCAATCTTATATGGCGGGAGGCACAAAACCAAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGAATTATCTCAGCCAAAGTCAGAAGTTAGCCCACCAGATGGACTACTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACCGTGTCGACTATTGCTTTGATACTAAAGGAAATGCCTCCATCGCTTAAGACATGCAATAATGCTCAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTCCTGAGAATGGTGTAGTGAAGATGGAATCTGATGTATGTCAATCTAATAGAAATGCAATCACAAGTGTGAATTTGTCGGTGCATGCAAAGGGTAGACCATCTGCCGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTTCGACAGTGGGCTGATGAGCTGCAGAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACCTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGAAGACGATGAAAAAGGAATTTATGAAGATCATGCCGTGCCAAGTAAGAAAAGGAAATGCCCTACTAGTTCTAAAAGCAGCAAGAAGGCTTTGAACAACATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTCCGAGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCAATCCAGAATTCCATCGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCGTATGCCGTGTACACATCATTCTGTTCTACGATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAACTGTCTTAAAGACAATCATGTTACGACGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATATCTTTGCCACCTAAATCTGTGGAATTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACGACTCTCTGGAAATCTTCAGTTGAGACGGCAATGAAGCTTCCTCAGGAAAAACagttatttcttttaaaatgttTAGAGGCTTCCCTGGCCTTCTGCGGTATCTGTAATGATGCTCCAGAAGAAGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCTGTGTCCTGCTACAAACTGCAAAACCCGACTTAGCATGTCTTCAGTGTTTCCCAGAGCCACACTGAACAGTTCTTTATCTGGTTCTGTGGTTGAGGATTCTGAACCCTGTTCTCAGACTCAACCATGtgattcttcaaaaataaagGCTGCACTTGAGGTTTTGCAGTCATTGTCTAAGCCACAATGCCATAATTCCCAAAATAAATCTGTGCAGAGCACTTCTAGGGAAAGTACTGATTGCAGCTCCACTTCTGCCGATAGTAGTGATGTTCCCGAAAAGAAAAGCTCTAATGATTCAGTTGGTTCTCCAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAGGGATGCTAGATTTACTAGAAGCATGTCTTAAGAGTTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCATGTCACGAGATAAAGCTGTTAAAGATTTTAACACACTACCAGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCTTGCCATGTTCTCATGCTAGATCTATGGTGGAATCCTACAACCGAAGATCAAGCCATAGACAGAGCACATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTGACTGTCAAAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGACAGATGGTTGCATCTGCATTTGGAGAGGATGGAAATGGTGATCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3903 0.4023 MTMADDGFQLPLFGDDGDESDDEKLAMDIESFLSVLDEDCVPSESSHEDSSLKDVSPGESAIHDNFFLQNGSSVLDSEHENQGPSSPNAFAGGYRDSFSVFESDETCYTERVGVSEHEMSSYSVDTNFAEANSNSNTATVCRDNLNLSLWKGDNNSQIKHVGDDVESEYASHSSIIENVDGTLEDYETALKDIIGVPRQQENDSCTSFEMPFVDVDRPTYFGTSTDSTICQGSDVHSDYSGYYQSLNCYQGQDVRPVVTDSSGYLPNGVCPEFWKNEEMMGNLKVEKSEFLTNTTNMTGGMHLSSIGRIPFQDNQFMPADSDYPSFFPGDVVFEDSESVQQSSCAPYISSECQSFNVKAEGDEMVMPYQNTFQNNNAKLNAVLEVKQSPCVFPTNGCQNYDFFRGEDRATIVKTENANYYQDFVDKTANKFPVNIGNLNSRSLNNSLPVARASITNGKQYNCGMSDIDSKPSEYKSIDSQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSAELGNSLNMAQSSRFDYTQSYMAGGTKPKARDEQYILRVALQELSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEMPPSLKTCNNAQKSVLETLDLDDDPLPENGVVKMESDVCQSNRNAITSVNLSVHAKGRPSAGTLVVCPTSVLRQWADELQNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKEDDEKGIYEDHAVPSKKRKCPTSSKSSKKALNNMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQTVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPQEKQLFLLKCLEASLAFCGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNLCPATNCKTRLSMSSVFPRATLNSSLSGSVVEDSEPCSQTQPCDSSKIKAALEVLQSLSKPQCHNSQNKSVQSTSRESTDCSSTSADSSDVPEKKSSNDSVGSPGEKAIVFSQWTGMLDLLEACLKSSSIQYRRLDGTMSVMSRDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVASAFGEDGNGDRQSRLTVDDLKYLFMM 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04132 1300 Pfam SNF2-related domain 594 968 IPR000330 GO:0005524|GO:0140658
Tsu08g04132 1300 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 853 IPR014001 -
Tsu08g04132 1300 Gene3D - 663 904 IPR038718 -
Tsu08g04132 1300 Pfam Helicase conserved C-terminal domain 1144 1242 IPR001650 -
Tsu08g04132 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1000 1058 IPR013083 -
Tsu08g04132 1300 CDD SF2_C_SNF 1143 1252 - -
Tsu08g04132 1300 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1133 1295 IPR001650 -
Tsu08g04132 1300 SMART helicmild6 1159 1242 IPR001650 -
Tsu08g04132 1300 ProSitePatterns Zinc finger RING-type signature. 1022 1031 IPR017907 -
Tsu08g04132 1300 Gene3D - 906 1299 IPR027417 -
Tsu08g04132 1300 MobiDBLite consensus disorder prediction 461 492 - -
Tsu08g04132 1300 CDD DEXDc_SHPRH-like 574 891 - -
Tsu08g04132 1300 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 430 1299 - -
Tsu08g04132 1300 MobiDBLite consensus disorder prediction 1103 1143 - -
Tsu08g04132 1300 Pfam Zinc finger, C3HC4 type (RING finger) 1007 1043 IPR018957 GO:0046872
Tsu08g04132 1300 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 430 1299 - -
Tsu08g04132 1300 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g04132 1300 SUPERFAMILY RING/U-box 1005 1064 - -
Tsu08g04132 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 891 IPR027417 -
Tsu08g04132 1300 Gene3D - 543 638 IPR038718 -
Tsu08g04132 1300 SMART ultradead3 570 868 IPR014001 -
Tsu08g04132 1300 SMART ring_2 1007 1045 IPR001841 -
Tsu08g04132 1300 ProSiteProfiles Zinc finger RING-type profile. 1007 1046 IPR001841 -
Tsu08g04132 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04132 Tsu-Chr8 59507965 59517177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04132 475 1299 RAD5 or RAD16-like Gene Family AT1G61140 62.456 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu08g04132 SNF2_N 2.7e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04132 - - gmx:100805307 1740.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04132 08 59507965 59517177 Tsu08g04132 08 59507965 59517177 ECH