Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04131 ATGGATTATAATATGACAAGTTTCTATACTTTTGTATTATTAGTACTATTTTTATCATCATTGAATCTTGTTTCTTCTAGACATAGAAAATTGAGCTATGGTGGTGATAATGGTGATCTTGTGACTAATTTACCTGGTCAGCCTCCAGTAGATTTCCAGCACTATGCTGGATATGTCACAGTtaatgaaaccaatggaagagCATTGTTTTACTGGTTTTTTGAAGCCATGACCAAACCTGAAGAGAAACCATTGGTTTTATGGCTTAATGGAGGTCCTGGTTGCTCTTCTGTGGGATATGGAGCAACACAGGAAATTGGCCCATTTCTAGTGGACACTGATGGCAAAggcattaaatttaataatttctcATGGAACAAAGAAGCAAACATGTTATTCTTGGAATCTCCTATTGGAGTTGGCTTTTCCTACTCAAATACAACTAGTGAATATGCACAATTAGGAGATGACTTCacagCTAATGATGCTTACACTTTTCTACACAATTGGTTTATCAAGTATCCATCATATAGAACAAGGGAATTTTACATAGCAGGAGAGAGTTATGCAGGAAAATATGTACCAGAGCTAGCTGAACTCATCATTGATAGAAACAATAACTCTTCCCTTCATATTGATCTCAAGGGCATTTTGCTAGGAAACCCTGAAACTTCTTATGGTGAGGATTGGTTAGGAGTGGTTGATTATGCTTGGAGTCATGCTGTGATATCCGACGAAACATACAAAAAAATCCGAAGAAGTTGTGACTTTAACAGTAGTGATCCATGGAAAAATGAAGAATGTACTCAAGGAGTGAATGAAGTACTCAAACAATACAATGAAATTGATATGTATAGCCTCTATACTTCTGTCTGCTTTGCCAGTACAGCACGACCGAACGATCAATCAATGAAAATGACGATGAAGCACTCATCTTTAATGATACCAAGGATCATGGGTGGATATGATCCATGTCTTGATGATTATGCTAAAGCTTTTTACAATAAACCAGATGTTCAGAAAGCCCTTCATGCAAGTGATGGTCACAATCTTAGGAATTGGAGTATTTGCAACAATGACATATTCAATGGATGGACACAATCAAAACGTTCTGTTATCCCAATTTACAAGAAGCTTATTTCAGTTGGACTTAGAATTTGGCTTTACAGTGGAGACACTGATGGTAGAGTGCCAGTGCTATCAACAAGATACAGCTTAAGCATTCTTGATTTGCCTATCACCAAACAATGGAGTCCTTGGTACAACGAAAAGgagGTAAGTGGATGGTATCAAGAATATGAAGGACTTACATTTGCTACATTTAGAGGAGCTGGTCATGCTGTGCCCTGTTTTAAACCAAGCAATTCACTTACATTCTTCACTTCCTTTCTTCTTGGAGAATCACCACCTTCTACTAgatga 1422 0.3615 MDYNMTSFYTFVLLVLFLSSLNLVSSRHRKLSYGGDNGDLVTNLPGQPPVDFQHYAGYVTVNETNGRALFYWFFEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGIKFNNFSWNKEANMLFLESPIGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFIKYPSYRTREFYIAGESYAGKYVPELAELIIDRNNNSSLHIDLKGILLGNPETSYGEDWLGVVDYAWSHAVISDETYKKIRRSCDFNSSDPWKNEECTQGVNEVLKQYNEIDMYSLYTSVCFASTARPNDQSMKMTMKHSSLMIPRIMGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLRNWSICNNDIFNGWTQSKRSVIPIYKKLISVGLRIWLYSGDTDGRVPVLSTRYSLSILDLPITKQWSPWYNEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLTFFTSFLLGESPPSTR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04131 473 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Tsu08g04131 473 Pfam Serine carboxypeptidase 45 464 IPR001563 GO:0004185|GO:0006508
Tsu08g04131 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 470 IPR001563 GO:0004185|GO:0006508
Tsu08g04131 473 Gene3D - 372 466 - -
Tsu08g04131 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Tsu08g04131 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Tsu08g04131 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Tsu08g04131 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Tsu08g04131 473 SUPERFAMILY alpha/beta-Hydrolases 37 467 IPR029058 -
Tsu08g04131 473 Gene3D - 325 361 - -
Tsu08g04131 473 PANTHER CARBOXYPEPTIDASE 11 470 - -
Tsu08g04131 473 Gene3D alpha/beta hydrolase 36 294 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04131 Tsu-Chr8 59491642 59495090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04131 330 467 Calmodulin-binding Proteins AT2G22960 31.655 4.75e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04131 K16297 - gmx:100819700 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01874 02 17492106 17515794 Tsu08g04131 08 59491642 59495090 PCT