Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04114 ATGTACATAAACAGTGGTTCTTCTTCCATGGGAAGGTCTTTCAAAGAATCTCTTAAACTTCTTGAAGCTGATATTCATCATGCCAATACCTTAGCATCGGATTTTCCGAGGGAATACGATGGTGCGTGTCTTCAGATGAGAATGTCATACAGTCCGGCAGCACACCTGTTTCTTTTTCTGGTTCAATGGACAGATTGCAATCTTGCTGGAGCCCTTGGACTATTAAGAATACTAATTTACAAGGTGTATGTGGATGGGACAACTACCATGTCTACACATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCGTCTTTATTGCAACTTGAAAAAGGTGTCACTGATGTGGaggataaaaaacaaaaggttgtATGCATGGAGAGGTATCGTAAAAGAGATGACGAGGAGCATAAACAATCCTCAGACATAGACattgaaagagaagaagagtgTGGAATATGCATGGAGATGAATAGTAAGATCGTGTTGCCTAACTGCAACCATGCCATGTGCCTTAAATGTTACCATGAATGgagAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTGAACTCGGGCGATCTTTGGGTATTCACCGATAATAGGGACATAGTAGATATGGAAACAGTGACAAGGGAGAATCTTAGAAGACTTTTCATGTACATAGATAAGTTACCTTTGATCATTCCAGACTCCCTTTTTGATCCTTATGACTCTCACTTAAGATAA 756 0.3796 MYINSGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDVEDKKQKVVCMERYRKRDDEEHKQSSDIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWVFTDNRDIVDMETVTRENLRRLFMYIDKLPLIIPDSLFDPYDSHLR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04114 251 PANTHER RING FINGER PROTEIN 41, 151 5 251 - -
Tsu08g04114 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Tsu08g04114 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 5 251 - -
Tsu08g04114 251 SUPERFAMILY RING/U-box 144 198 - -
Tsu08g04114 251 SMART ring_2 155 192 IPR001841 -
Tsu08g04114 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Tsu08g04114 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Tsu08g04114 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04114 Tsu-Chr8 59375451 59378944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04114 147 196 C3H Transcription Factor Family AT5G41350 42.593 3.75e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04114 K25840 - gmx:100789769 471.47