LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g04111	ATGGCACCACCTGCTACTGGTGTAACTCCCACCATTTCAGGGCAAATGCCGGGGATTGCTCATATGATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCTCGGCGAGTGTACGTTGGTGGGCTTCCTCCTTTTACTAACGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGATTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCATTGGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGTTCAATTGGTGGAGCCGAGGGACTTGATCGTATATTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATGCTAAACCAGAAGAGGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGGATCCCAACAAGCGAAGAAAGCCCCACTAAAGTTTTATGTTTAACTCAGGCCGTCACTACCGAACAGTTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCGAGATGAATGCCGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTGTTCTTGGAATACTCCGACTGTACTGCTTGTTTGGCTGCAAAAAATGCTCTAAATGGTAGAAAATTTGGGGGCAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA	1218	0.4286	MAPPATGVTPTISGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQAIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAVLGPCQPSSNLNLSAVGLTAGSIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHAKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLTQAVTTEQLTDNGEYEEILEDMRDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGNTVTAVYYPEEKYHSMEYDL	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g04111	405	Gene3D	-	53	151	IPR012677	-
	Tsu08g04111	405	SUPERFAMILY	RNA-binding domain, RBD	58	143	IPR035979	GO:0003676
	Tsu08g04111	405	PANTHER	RNA-BINDING PROTEIN	1	404	-	-
	Tsu08g04111	405	Gene3D	-	172	274	IPR012677	-
	Tsu08g04111	405	CDD	RRM3_U2AF65	303	391	-	-
	Tsu08g04111	405	SUPERFAMILY	RNA-binding domain, RBD	179	396	IPR035979	GO:0003676
	Tsu08g04111	405	PANTHER	U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT	1	404	-	-
	Tsu08g04111	405	CDD	RRM1_U2AF65	57	139	-	-
	Tsu08g04111	405	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	178	256	IPR000504	GO:0003723
	Tsu08g04111	405	SMART	rrm1_1	179	252	IPR000504	GO:0003723
	Tsu08g04111	405	SMART	rrm1_1	305	391	IPR000504	GO:0003723
	Tsu08g04111	405	SMART	rrm1_1	59	137	IPR000504	GO:0003723
	Tsu08g04111	405	TIGRFAM	U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor	13	403	IPR006529	GO:0003723\|GO:0005634\|GO:0006397
	Tsu08g04111	405	CDD	RRM2_U2AF65	178	254	-	-
	Tsu08g04111	405	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	58	141	IPR000504	GO:0003723
	Tsu08g04111	405	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	180	249	IPR000504	GO:0003723
	Tsu08g04111	405	Gene3D	-	299	404	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g04111	Tsu-Chr8	59332601	59339907	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g04111	180	384	Eukaryotic Initiation Factors Gene Family	AT1G22760	25.366	6.70e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g04111	K12837		-	cpap:110817812	597.43