Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04105 ATGAGCCAACCAATGATAAACCTTACTAGCCAAATACCGTTACTAGATATTCGAAgATTACAGAATAAGAGTGatatagcaaaaaaaaacattatgaggTGTGGTTGCTTTAGAAGATTATCTATAAAGAAGGAAAAACGTCCTTctaataattatatttctaGTGAAATTGAAGGTTATCCTTTGGATAATATTAGGCATTTTTCTGATAAGGAATTGTGTTTGGCAACTGATAATTATCATTTAATCAATAAGATAGGAAGGGGAGGTTTTGGAACTGTTTTCCAGGGAACATTAAAAGATGGAAGAAAGGTAGCAGTGAAACCACTTTCTGTTGGATCAAAGCAAGGAGTTCGCGAATTTTTAACCGAAATTAATACCTTATCATACGTTAAACACGAAAACCTTGTTGAATTGGTTGGATACTGCGTTCAAGGACCTAATCGTACAGTCGTCTATGAGTATGTTGAAAATGGAAACCTTCATACTGCATTACTTGgcaaaaagaaatcaaatatcaaactaGATTGGAGAAAACGGTCTGCTATTTGTGCCGGTACTGCTAAAGGTCTTGCATATCTTCATGAAGAACTTGCACAACATATTGTACATAGAGACATTAAAGCTAGTAATGTACTACTTGATAAAGACTTTAATCCCAAAATAGGTGATTTTGGTATGGCCAAATTATTTCCAGATGATATAACTCACATCAGCACAAGAATTGCCGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGACAATTAACTAAGAAAGCTGATGTATACAGCTTTGGAGTTCTTATACTTGAAATCATAAGTGGTAAAAGCAGCTCAAGGACAAGTTGGGAAGGATCACAAAAATCCCTCTTAGAATGGGCATGGCATCTTCATGAAGAGGAGAAATGGTTGGAGCTAGTAGATCAAGACATGGAAGAATTTTCTGAGAAAGAGGTAATCAAGTACATTAAGGTTGCTCTTTTCTGCACACAAGCGGCAGCAAAAAGAAGGCCATTGATGACTCAAGTGGTTGATATGCTCACTAAAGATATTCAGCTCAATGAGAAACAACTAACAGCACCGGGATTGTTCAATACTGATCCTGGAGAATCTTCTCAAAAGAAATCGAACCCCGAATCTTTAGTTTATCATACTAGTTCTACTGAAGCTTTGGCTAGTATTACCGAGGTCACGGCCAGGTGA 1212 0.354 MSQPMINLTSQIPLLDIRRLQNKSDIAKKNIMRCGCFRRLSIKKEKRPSNNYISSEIEGYPLDNIRHFSDKELCLATDNYHLINKIGRGGFGTVFQGTLKDGRKVAVKPLSVGSKQGVREFLTEINTLSYVKHENLVELVGYCVQGPNRTVVYEYVENGNLHTALLGKKKSNIKLDWRKRSAICAGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSRTSWEGSQKSLLEWAWHLHEEEKWLELVDQDMEEFSEKEVIKYIKVALFCTQAAAKRRPLMTQVVDMLTKDIQLNEKQLTAPGLFNTDPGESSQKKSNPESLVYHTSSTEALASITEVTAR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04105 403 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 391 - -
Tsu08g04105 403 CDD STKc_IRAK 86 352 - -
Tsu08g04105 403 SMART serkin_6 80 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04105 403 MobiDBLite consensus disorder prediction 363 387 - -
Tsu08g04105 403 Pfam Protein tyrosine and serine/threonine kinase 81 350 IPR001245 GO:0004672|GO:0006468
Tsu08g04105 403 SUPERFAMILY Protein kinase-like (PK-like) 53 350 IPR011009 -
Tsu08g04105 403 PANTHER - 29 391 - -
Tsu08g04105 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Tsu08g04105 403 ProSiteProfiles Protein kinase domain profile. 80 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04105 403 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Tsu08g04105 403 Gene3D Phosphorylase Kinase; domain 1 51 155 - -
Tsu08g04105 403 Gene3D Transferase(Phosphotransferase) domain 1 156 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04105 Tsu-Chr8 59297392 59303681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04105 40 365 Receptor kinase-like Gene Family AT1G56120 48.936 5.67e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g04105 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04105 - - mtr:MTR_2g013210 634.024