Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04085 ATGATCAGACACAAAAACTCTcaacatcttcatcttcttctctcaacaattttctttcttcttttcaactcAATCTCCACCATTGATTTCATCTTCAACGGCTTCAACTCTTCAAACGTTCTTCTCTTTGGCAATGCTACAATTGATTCTCAAATTCTAACACTTACCCATCACCAATCTTTCTCTATTGGTCGTGCTCTTTACCCTAAAAAAATTCCCACAAAAAACTCTTCTTTTATATACCCTTTTTCCACTTCCTTCATCTTTTCAATGGCACCTTTTGAAGACACTCTTCCTGGTCATGGCTTAGTTTTCATCTTCACACCTGTTAAAGGAATTCAAGGTACAAGTTCAGCTCAACATCTTGGTCTTTTTAATCTTACCAATAATGGAAATTCCAACAACCATGTTTTTGGTGTTGAGTTTGATGTTTTTATGAATCAAGAATTTGATGACATTAACAACAACCATGTTGGAATTGACATAAATTCTCTCAAGTCTTATGTTTCTCATGATGTTGGGTTTTGGTCGGATGatgaaaaaagtgaaaaagataagatttttaagaaattgaagTTGAATAATGGTGAAAATTATCAAGTTTGGATTGATTATGAAGATTCTTTGATTAATGTTACATTGGCAAAATTAGGTATGAAAAAACCTATTAAACCATTGTTGAATGTTTCTATCAATTTGTCTGATGTTTTTGAAGATGAAATGTTTGTTGGATTTACTAGCTCAACAGGTCAATTAGTTGAAAGTCATAAGATTTTAGCTTGGAGTTTTAGCAATACAAATTTTTCATTGAGTGATGAACTTATTACTATTGGATTACCCTCTTTTGTTCTTCcaaaagattcaatttttaagTCCAAAGGTTTTGTTGCAGGATTTAGTGTAAtagttttctttattgtttgtgttttggttttgttggtAATGTTTTTGAttcaaaagaagagaaagagagaaaagaagagaagtgAAATGGAAGATTGGGAGTTAGAATATTGGCCACATAGAATGTCATATGAAGAAATAGAAGCTTCAACAAAGAAATTCTCTGAGGAAAATGTGATTGGAGTTGGTGGGAATGGAAAAGTTTACAAAGGTGTTTTAAGAGGAGGTGTTATGATTGCTGTGAAAAACATTTCTCATGAGAATGATGGTTTGAGAGAATTTCTTGCAGAAATTTCAACTCTTGGAAGGTTAAAGCAAAGGAATTTAGTAGGGTTAAGAGGTTGGTGTAAGAAAAATGCTGGAAATTTCTTATTAGTTTATGATTATATGGAAAATGGAAGTTTAGACAAAAGGGTTTTTGATTGTGATGAGACCAAGATGTTAAACTATGATGATAGAATAAGGATTATTAAGGATGTGGCTTATGCTGTCTTGTATTTACATGAAGGGTGGGAGGTGAAAGTTGTGCATAGAGACATTAAGGCAAGCAATGTTTTACTTGATAAGGATATGAATGCAAAGTTAGGTGATTTTGGTTTAGCTAGAATGCAAAATCATGGTCAAATTGCTAGCACAACAAAATTGGTCGGAACGGTTGGTTACATGGCTCCTGAAGTGATCAAAACCGGTAGAGCTTCGACCCATACCGATGTTTACATGTTCGGTATCTTGATTTTAGAGGTTATGTGTGGAAGGAGACCATTAGAAGAAGGTAAGGAACCTTTGGTGGAGTTTGTTTGGAAACTTATGGTACAAGGGGAACTTGTTTGTGCACTTGATGAGAAGTTAAGGGCTAAAGGAGAGTTTAGTTTGCAAGAAATGGAGAGAGTGTTACATTTAGGTTTGTTGTGTGCATATCCTGAACCAAAATCTAGGCCAACAATGAGACAAATTGTGAATATTTTAGAAGGGAAGAATGAGGGAAATGAAGAGTCAGAGATTGAGAATATGGATAGTTATTTGCTGCAGCAGTTAAAATCAAGGGATATATTGGCTGAATATTCTCATTATTTTAGCTATGCATCACACccaacttttcaagatattcgTCAATTATCATCAACATCTTTCACTTGGTCCGGATCTTTAGTTGAGGGTAGGTGA 2067 0.314 MIRHKNSQHLHLLLSTIFFLLFNSISTIDFIFNGFNSSNVLLFGNATIDSQILTLTHHQSFSIGRALYPKKIPTKNSSFIYPFSTSFIFSMAPFEDTLPGHGLVFIFTPVKGIQGTSSAQHLGLFNLTNNGNSNNHVFGVEFDVFMNQEFDDINNNHVGIDINSLKSYVSHDVGFWSDDEKSEKDKIFKKLKLNNGENYQVWIDYEDSLINVTLAKLGMKKPIKPLLNVSINLSDVFEDEMFVGFTSSTGQLVESHKILAWSFSNTNFSLSDELITIGLPSFVLPKDSIFKSKGFVAGFSVIVFFIVCVLVLLVMFLIQKKRKREKKRSEMEDWELEYWPHRMSYEEIEASTKKFSEENVIGVGGNGKVYKGVLRGGVMIAVKNISHENDGLREFLAEISTLGRLKQRNLVGLRGWCKKNAGNFLLVYDYMENGSLDKRVFDCDETKMLNYDDRIRIIKDVAYAVLYLHEGWEVKVVHRDIKASNVLLDKDMNAKLGDFGLARMQNHGQIASTTKLVGTVGYMAPEVIKTGRASTHTDVYMFGILILEVMCGRRPLEEGKEPLVEFVWKLMVQGELVCALDEKLRAKGEFSLQEMERVLHLGLLCAYPEPKSRPTMRQIVNILEGKNEGNEESEIENMDSYLLQQLKSRDILAEYSHYFSYASHPTFQDIRQLSSTSFTWSGSLVEGR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04085 688 Gene3D - 26 267 - -
Tsu08g04085 688 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 10 677 - -
Tsu08g04085 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 273 IPR013320 -
Tsu08g04085 688 Gene3D Phosphorylase Kinase; domain 1 315 430 - -
Tsu08g04085 688 SMART serkin_6 355 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04085 688 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04085 688 Coils Coil 317 337 - -
Tsu08g04085 688 Pfam Legume lectin domain 28 267 IPR001220 GO:0030246
Tsu08g04085 688 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Tsu08g04085 688 Gene3D Transferase(Phosphotransferase) domain 1 431 649 - -
Tsu08g04085 688 SUPERFAMILY Protein kinase-like (PK-like) 330 624 IPR011009 -
Tsu08g04085 688 CDD lectin_legume_LecRK_Arcelin_ConA 28 266 IPR001220 GO:0030246
Tsu08g04085 688 PANTHER - 10 677 - -
Tsu08g04085 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Tsu08g04085 688 Pfam Protein kinase domain 356 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04085 Tsu-Chr8 59100621 59102885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04085 23 571 Receptor kinase-like Gene Family AT4G04960 65.827 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu08g04085 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04085 - - gmx:100804391 1115.52