Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04079 ATGGAGAAGAACCCTAGTTCATCAAGAGTTGATAGAAAAATCAttgagaaaaaaagaagaattgaaaTGAAAGATCTCTGCAACAAGCTCTACTCACTTGTGCCTCATCAAACTTCAAAGGAAGCTATTTCAAAACCGGATAAGGTAGAGGAAGCAACAAACTACATAAAGAAATTACAGATCAACTTGgagaaaatgaatgaaaagaAGAATTTTCTAGTAGGAATTCAAAGGTCAACAAATGTGATGAATATGGATAGAAGCAAGAACTTGGGATTTAAATCTCCAAAAATTGAGATCCAACAATTTGGTGTAGTCTTAGAGGTTGTTTTAATAACATGTTTGGATTCTCAAATTTTGTTCAATGAAACAATTCGTGTTCTTCATGAAGAAGGAGTTGATATTGTTAATGCTAGTTATAAAGTCAATGAAGATTCTATTTTCCATTCAATACATTGTCAGGTAGGAGAATTTGGTAATGAAGCTGCAAGGATATCTGAGAAATTGAAGAAGTTTATATATTCTTGA 528 0.3011 MEKNPSSSRVDRKIIEKKRRIEMKDLCNKLYSLVPHQTSKEAISKPDKVEEATNYIKKLQINLEKMNEKKNFLVGIQRSTNVMNMDRSKNLGFKSPKIEIQQFGVVLEVVLITCLDSQILFNETIRVLHEEGVDIVNASYKVNEDSIFHSIHCQVGEFGNEAARISEKLKKFIYS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04079 175 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Tsu08g04079 175 SMART finulus 13 65 IPR011598 GO:0046983
Tsu08g04079 175 Coils Coil 49 69 - -
Tsu08g04079 175 PANTHER TRANSCRIPTION FACTOR BHLH162 1 174 - -
Tsu08g04079 175 Gene3D - 1 89 IPR036638 GO:0046983
Tsu08g04079 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Tsu08g04079 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 73 IPR036638 GO:0046983
Tsu08g04079 175 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 174 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04079 Tsu-Chr8 59005460 59006723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04079 7 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.884 1.28e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g04079 HLH 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04079 - - gmx:100784418 216.083