Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04078 ATGGTAGGAGTTGCATTCGACGTCGGAGCCGTTCCATTCAATCCCGACGGATGGGGTCCAATGGATTCCACAACCGCcgccaacaacaacaacaaccttccTCTCAATGTCCCTTTCGCCCCTTTCAATCGCTCCGACAAATTAGGTCGAATCGCCGATTGGACTCGCAATTTCAACAACCAAACCCGAAACAGAAACCCCGCTGATTCCGCTTTCGATTTCACACTGGACGATTCTTTCCCTGCTTCCGCCGATGACGATAACACCTTCCGTCTCGTCGACGGTAAACCACCACCGAAACCTAAATTCGGCCCCAAATGGCGTTACCAGCAAGTCCGACAACTCCCTCAACGTCGCGATGAAGAAGTTGAAGCTAAGAAACGTGAGGCGGAGAAAGATAGAGCTCGTCGTGATCGTCTCTATCATCAGAATCGTTCAAACCCTCATAACAATCGCCGTGAGGCTGCGGTTTGTAAATCTTCGGTTGAAATTCAACCGGAGTGGAATATGCATGATCAGATTCCGTTTTCGACTTTCACCAAGCTTTCCTACAATGTACCTGAACCTGAAGATCTTCTCATGTGTGGTGCTCTTGAGTATTACGATCGTTCTTTTGATCGAATCAACCCGAAGAATGAACGTAGGCTGGAGAGGTTCAAGAATCGTAACTTCTTTAAGGTTACTACCACTGATGATCCTGTTATTAGGAGACTTGCTAATGAGGATAAGGCTACGGTTTTTGCTACCGATACTATTCTTTCGACACTTATGTGTGCTTCGAGGTCTGTTTATTCATGGGATATTGTTGTTCAGCGAGTTGGGAATAAGCTATTCTTTGATAAGCGTGATGGGTCACAGTTGGATTTGCTTGCTGTTCATGAGACTTCACAGGAGCCTTTGCCTGAAGCTAAGGATGATATCAACTCTGCTCATTCGTTGAGTGTTGAAGCTGCTTATATCAATCAGAATTTCTCTCAGCAAGTTTTGGTTAGGGATGGGAATAAGGATACTTTTGATGAGGCTAACCCTTTTGCTAATGAGGGTGAAGAGGTTGCTTCGGTTGCGTATAGGTATAGAAGGTGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAAGTGCATAGTGTTGTTGACTTGAACAAGCAAAAGTCATTCCTTACTGTGAATGCTTTGAATGAGTTTGATTCGAAGTATTCTGGTGTTGATTGGAGGCAGAAGTTGGAAACTCAAAGGGGTGCTGTTTTGGCTACTGAGCTCAAGAACAATGCTAACAAGTTGGCTAAGTGGACTGCACAAGCTCTTTTGGCTAGTGCTGATATGATGAAGTTGGGTTATGTGTCTAGGATTCATCCTCGAGACCATTTTAATCATGTTATCTTGGGTGTGGTTGGATATAAACCCAAGGACTTTGCTGCTCAAATTAATTTGAACACTAACAATATGTGGGGGATTGTTAAATCTATTGTAGACTTGTGTATGAAATTGAATGAGGGGAAATATGTTATTGTGAAGGATCCATCTAAGCCTCAGATTAGGATTTATGAGGTTCCAGCTGATGCATTTGAGAACGACTATGTGGAGGAGCCAATTCCGGAAGAGGACCAACTTCAGCCTACTGCAGAGGGTGCTGATGGTGGAGAGGAAGCTGCTGCTGCTGCTACAAATGGCGTGGAAGATAAGCCGGTTGACACTCAAGTTTAA 1707 0.4364 MVGVAFDVGAVPFNPDGWGPMDSTTAANNNNNLPLNVPFAPFNRSDKLGRIADWTRNFNNQTRNRNPADSAFDFTLDDSFPASADDDNTFRLVDGKPPPKPKFGPKWRYQQVRQLPQRRDEEVEAKKREAEKDRARRDRLYHQNRSNPHNNRREAAVCKSSVEIQPEWNMHDQIPFSTFTKLSYNVPEPEDLLMCGALEYYDRSFDRINPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCASRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLVRDGNKDTFDEANPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSVVDLNKQKSFLTVNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFAAQINLNTNNMWGIVKSIVDLCMKLNEGKYVIVKDPSKPQIRIYEVPADAFENDYVEEPIPEEDQLQPTAEGADGGEEAAAAATNGVEDKPVDTQV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04078 568 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 1 551 - -
Tsu08g04078 568 MobiDBLite consensus disorder prediction 530 568 - -
Tsu08g04078 568 MobiDBLite consensus disorder prediction 113 149 - -
Tsu08g04078 568 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 4 529 IPR007783 GO:0003743|GO:0005737|GO:0005852
Tsu08g04078 568 Coils Coil 118 138 - -
Tsu08g04078 568 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 1 551 IPR007783 GO:0003743|GO:0005737|GO:0005852
Tsu08g04078 568 PIRSF Transl_init_eIF3d 1 547 IPR007783 GO:0003743|GO:0005737|GO:0005852
Tsu08g04078 568 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 8 517 IPR007783 GO:0003743|GO:0005737|GO:0005852
Tsu08g04078 568 MobiDBLite consensus disorder prediction 85 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04078 Tsu-Chr8 58997569 59002217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04078 1 565 Eukaryotic Initiation Factors Gene Family AT4G20980 75.042 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04078 K03251 - gmx:100799613 952.584