Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04072 ATGGACTCAAACAATAATCATCCTCCATGGAAGAATCATGCAATGTTTCAATACTATGTGTATCAATACATGATCAAAAAAGGATTGCATGAATCCGCTGAGATTTTCTTAAACGAAGCTAACTTTCCCAAGACTCATCCTACTgACATGCAATTTGTGGAATCAATGTTTGAAGATTCAACGGAAGGAGTCCTGCATGAATGGTGGTCTGTTTTCTCCGAGGTATTCTTGTCCAGACTAAGGAGTCGTCAGGAGTCTCAGCCACAGTCCCCTAATATGGCGGTCCCGAGAATGACCGATACTTCAACAAATATATCCTCTTTTAGAATCCCTCAAATGCCAATGAATGAACAGAGACCTCAACAATTTCAAGCCAGCTCCAGCTTTAACAACGTGATGGCACAAACTACTTCTAGATTGATGCCTCCGAGACTGCACAATAATAATTCCCTTGGAAATTTGGCTGAACATCCAAGTTTGGTTGCTCGTATCAATGAAAATGATCCAAACTTCTTCTCACGGATGAGTTCAAACCATCCATTGCAAGATGTAGGCAACAAGCTCCAGAAGCCAGTCTATAAGGACAACGGAATTGTTATGCGTGTAGGGCCTCCCGTACCTAATAACCCTCTGGATGTAAGACAAAAAGCAATGCTGCCTTCAGGTCGACCTCAAGTAACAAGCATGTCTCGAACCTATTCTCCCTATTCCCCATTTGGATATAACTATAAAGTTCCTAATCTTGTGCCAATAAATGGAGTGCCATTAAATAATCAGATGCTAACTTCTCTTTTGCAAATGCCGAACTATGGACAGCAATGTCAAGTGTTGAACACACAAAATCAGGAAGCAATCCTGACTCAAGCCCTTGCAAGTACTCCTAACACTCAGACTTTCGCAGCTCCTATAAACTCTACCAGATGTGACAGTCAATATCCAGAGATTCCCAAGGCTGAATCAAGTAATAACGATAGGGAGATGATGGACCAAACCATTAGAGCTGAAGAACCTCAATGCAAGCAGGATCAGCAAATGCAGTCCCAAAATCTTGATAACAACAGAAAGAGAAAGATAGTAGCACCCTTAGGAGCTGGAGAGTGTGTCCTGGACCGTGTGGATGCAGCAGATGGAAAACAAGCAGATGAAAATGTGGATTCTTACCTGTCTATTGAAAATGGAAATGCTGATCATAAAACTACGCCTTTCAGCAATCTGAAACGAAATTCAGGAACAGACATGAGAAATGGAGATAAAGGTTTTTCATTCCAAGAGGTTGGATGCCTTCACTCGAGCGAAAGCAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAAGTTTTGGCAAGTGCTGGACATGACAAGAAGGTGGTTTTTATTTGGAACATGGaaacttttcaaaattttgcTACTGAGGAAACACATTCACTTCTCATTACAGATGTTCGGTTTAGACCAGGCTCAACTATATTTGCGACATCTTCCTTTGATAAATCTATAAGACTATGGGATACAAACAAACCAAACAAATCATTATTCAAATTTTCTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGAAAGGCAGACCTTCTTTGCTCGTGTGATAGCAATGATATAATTCGTCTGTGGAATGTGAACCAACGTTCTTGCATGCATGTAACTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTCTTTATGGAAAGCTTCTAGGTACTGCTACTGGAAATATTCTCAAAATATTTGATGTTGAGGCTGATAAAGTTGTGTTGAATCTAAAGGGACATGATAAGGATGTTGTTTCCATTTGTTGGGATACAAGTGGAAAGTATATTGCCTCTGTCAGTGAAGATAGTGCACGAGTCTGGTCAGAAGGAAAATGCATCAATAAGTTGCTTTCAAACGGGAACAAGTTTCAGTCGTGCATATTTCATCCAGCATATTCTAACCTCTTAGTTATTGGTGGCTATCAGTCCCTTGAATTATGGAGTCCAACTGAGGGTAATAAAACAACATCAATTTCTGCGCACAAGGGATTAATTGCAGGACTAGCAGATTCACCACAAAATGAATTGATTGCCTCGGCTAGCCATGATTGCCTTGTGAAACTATGGAAATAA 2130 0.4028 MDSNNNHPPWKNHAMFQYYVYQYMIKKGLHESAEIFLNEANFPKTHPTDMQFVESMFEDSTEGVLHEWWSVFSEVFLSRLRSRQESQPQSPNMAVPRMTDTSTNISSFRIPQMPMNEQRPQQFQASSSFNNVMAQTTSRLMPPRLHNNNSLGNLAEHPSLVARINENDPNFFSRMSSNHPLQDVGNKLQKPVYKDNGIVMRVGPPVPNNPLDVRQKAMLPSGRPQVTSMSRTYSPYSPFGYNYKVPNLVPINGVPLNNQMLTSLLQMPNYGQQCQVLNTQNQEAILTQALASTPNTQTFAAPINSTRCDSQYPEIPKAESSNNDREMMDQTIRAEEPQCKQDQQMQSQNLDNNRKRKIVAPLGAGECVLDRVDAADGKQADENVDSYLSIENGNADHKTTPFSNLKRNSGTDMRNGDKGFSFQEVGCLHSSESKVLASHFSSNGKVLASAGHDKKVVFIWNMETFQNFATEETHSLLITDVRFRPGSTIFATSSFDKSIRLWDTNKPNKSLFKFSGHSEQVMSLDFHPRKADLLCSCDSNDIIRLWNVNQRSCMHVTKGGSKQVRFQPLYGKLLGTATGNILKIFDVEADKVVLNLKGHDKDVVSICWDTSGKYIASVSEDSARVWSEGKCINKLLSNGNKFQSCIFHPAYSNLLVIGGYQSLELWSPTEGNKTTSISAHKGLIAGLADSPQNELIASASHDCLVKLWK 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04072 709 Gene3D - 338 566 IPR015943 GO:0005515
Tsu08g04072 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 514 556 IPR001680 GO:0005515
Tsu08g04072 709 SMART Lish 12 44 IPR006594 GO:0005515
Tsu08g04072 709 CDD WD40 424 709 - -
Tsu08g04072 709 SMART WD40_4 464 503 IPR001680 GO:0005515
Tsu08g04072 709 SMART WD40_4 550 586 IPR001680 GO:0005515
Tsu08g04072 709 SMART WD40_4 589 627 IPR001680 GO:0005515
Tsu08g04072 709 SMART WD40_4 507 547 IPR001680 GO:0005515
Tsu08g04072 709 SMART WD40_4 628 667 IPR001680 GO:0005515
Tsu08g04072 709 SMART WD40_4 670 709 IPR001680 GO:0005515
Tsu08g04072 709 SMART WD40_4 421 461 IPR001680 GO:0005515
Tsu08g04072 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 709 - -
Tsu08g04072 709 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Tsu08g04072 709 ProSitePatterns Trp-Asp (WD) repeats signature. 534 548 IPR019775 -
Tsu08g04072 709 Gene3D - 567 709 IPR015943 GO:0005515
Tsu08g04072 709 SUPERFAMILY WD40 repeat-like 421 709 IPR036322 GO:0005515
Tsu08g04072 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 503 IPR001680 GO:0005515
Tsu08g04072 709 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 709 IPR001680 GO:0005515
Tsu08g04072 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 503 - -
Tsu08g04072 709 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 514 549 - -
Tsu08g04072 709 Pfam LisH 18 40 IPR006594 GO:0005515
Tsu08g04072 709 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 709 IPR044716 GO:0003714
Tsu08g04072 709 Pfam WD domain, G-beta repeat 672 709 IPR001680 GO:0005515
Tsu08g04072 709 Pfam WD domain, G-beta repeat 510 547 IPR001680 GO:0005515
Tsu08g04072 709 Pfam WD domain, G-beta repeat 472 503 IPR001680 GO:0005515
Tsu08g04072 709 Pfam WD domain, G-beta repeat 593 627 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04072 Tsu-Chr8 58932935 58938971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04072 446 626 U-box Gene Family AT2G33340 27.368 2.67e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04072 - - gsj:114387334 780.015