Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04070 ATGAAGttcaacgttgcaaatcctaCCACTGGATGCCAGAAGAAGCTGGAAATCGATGATGATACGAAGCTTCGAGCTTTTTGGGATAAGAGGCTCTCTCAAGAAGTTTTGGGTGATGCTTTGGGTGAGGAATTCAAAGGTtatgttttcaaaatcactGGAGGATGTGACAAACAAGGGTTTCCAATGAAGCAGGGTGTGTTAACTCCTGGGCGTGTTCGCCTTTTGCTTCACCGAGGAACTCCTTGCTTCCGAGGATATGGAAGGCGCACTGGAGAGCGAAGGAGGAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGACCTCTCTGTGTTGAACTTGGTTATTGTTAAGAAGGGTGAGAATGATTTGCCAGGTTTGACTGATGTTGAAAAGCCAAGAATGAGGGGTCCCAAAAGAGCTTCCAAAATCCGTAAGCTCTTCAATCTGTCCAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGTCGTACTTTCACAACCAAAGCTGGGAAAAAGGTGAGCAAAGCACCAAAGATTCAGCGCCTGGTCACACCCCTGACACTTCAAAGAAAGAGGGCAAGAATTGCTGataagaagaaaagaattgCCAAAGCTAAATCAGAGGCAGCAGAATACCAGAAACTTCTTGCCTCCAGGTTGAAGGAGCAAAGGGAACGACGTAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTCTCCACCGCAAAGCAAGCTGTTGCAGCATAG 747 0.4431 MKFNVANPTTGCQKKLEIDDDTKLRAFWDKRLSQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTAKQAVAA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04070 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 244 - -
Tsu08g04070 248 Gene3D - 133 234 - -
Tsu08g04070 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Tsu08g04070 248 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Tsu08g04070 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 244 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu08g04070 248 Coils Coil 189 216 - -
Tsu08g04070 248 MobiDBLite consensus disorder prediction 222 248 - -
Tsu08g04070 248 MobiDBLite consensus disorder prediction 222 237 - -
Tsu08g04070 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Tsu08g04070 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04070 Tsu-Chr8 58893377 58896332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04070 1 242 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 74.380 2.33e-120 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04070 K02991 - gmx:100804076 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01943 02 18355454 18359049 Tsu08g04070 08 58893377 58896332 PCT