Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04058 ATGGATGAAAGTTGGGGTGAAGGAAAGAGAAACTATGAATACATAGAAGAAAATGagtatgaagaagaagaagaacaagatgTGAGTTATGGAGATGGAAAGAAGAAAAGAGTGATGAATGATGGTTACAACAAGAAAGGATCTAAAGCTGGAGGATCAGTGCCACCTTGTTGTCAAGTTGATAACTGTAATGTTGATCTAAGTGGTGCTAAGCAGTACCATAAACGCCATAAGGTTTGTGAGAACCATTCTAAGGCTCATTCTGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAACAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTTAAAAAGAAGTTGTAGAAGACGTTTGGCCGGACATAATGAGAGGCGTCGCAAAAGTGCATCGGAATATCAAGGAGAAGTCCATTGA 426 0.3685 MDESWGEGKRNYEYIEENEYEEEEEQDVSYGDGKKKRVMNDGYNKKGSKAGGSVPPCCQVDNCNVDLSGAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHELSEFDDLKRSCRRRLAGHNERRRKSASEYQGEVH 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04058 141 PIRSF SBP 3 141 IPR017238 GO:0003677|GO:0003700|GO:0009908
Tsu08g04058 141 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Tsu08g04058 141 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Tsu08g04058 141 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Tsu08g04058 141 Pfam SBP domain 58 131 IPR004333 GO:0003677
Tsu08g04058 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 8 135 - -
Tsu08g04058 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 135 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04058 Tsu-Chr8 58816353 58819111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04058 42 135 SBP-box Gene Family AT2G33810 64.894 3.74e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu08g04058 SBP 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04058 - - gmx:100782285 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04058 08 58816353 58819111 Tsu08g04058 08 58816353 58819111 ECH
Tsu08g04058 08 58816353 58819111 Tsu02g01947 02 18449574 18453344 ECH
Tsu02g01947 02 18449574 18453344 Tsu08g04058 08 58816353 58819111 PCT