Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu08g04058 | ATGGATGAAAGTTGGGGTGAAGGAAAGAGAAACTATGAATACATAGAAGAAAATGagtatgaagaagaagaagaacaagatgTGAGTTATGGAGATGGAAAGAAGAAAAGAGTGATGAATGATGGTTACAACAAGAAAGGATCTAAAGCTGGAGGATCAGTGCCACCTTGTTGTCAAGTTGATAACTGTAATGTTGATCTAAGTGGTGCTAAGCAGTACCATAAACGCCATAAGGTTTGTGAGAACCATTCTAAGGCTCATTCTGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAACAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTTAAAAAGAAGTTGTAGAAGACGTTTGGCCGGACATAATGAGAGGCGTCGCAAAAGTGCATCGGAATATCAAGGAGAAGTCCATTGA | 426 | 0.3685 | MDESWGEGKRNYEYIEENEYEEEEEQDVSYGDGKKKRVMNDGYNKKGSKAGGSVPPCCQVDNCNVDLSGAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHELSEFDDLKRSCRRRLAGHNERRRKSASEYQGEVH | 141 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu08g04058 | 141 | PIRSF | SBP | 3 | 141 | IPR017238 | GO:0003677|GO:0003700|GO:0009908 | |
Tsu08g04058 | 141 | SUPERFAMILY | SBT domain | 55 | 135 | IPR036893 | GO:0003677|GO:0005634 | |
Tsu08g04058 | 141 | ProSiteProfiles | Zinc finger SBP-type profile. | 55 | 132 | IPR004333 | GO:0003677 | |
Tsu08g04058 | 141 | Gene3D | - | 48 | 119 | IPR036893 | GO:0003677|GO:0005634 | |
Tsu08g04058 | 141 | Pfam | SBP domain | 58 | 131 | IPR004333 | GO:0003677 | |
Tsu08g04058 | 141 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 | 8 | 135 | - | - | |
Tsu08g04058 | 141 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 8 | 135 | IPR044817 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu08g04058 | Tsu-Chr8 | 58816353 | 58819111 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu08g04058 | 42 | 135 | SBP-box Gene Family | AT2G33810 | 64.894 | 3.74e-38 | 124 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Tsu08g04058 | SBP | 1.6e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu08g04058 | - | - | gmx:100782285 | 197.593 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu08g04058 | 08 | 58816353 | 58819111 | Tsu08g04058 | 08 | 58816353 | 58819111 | ECH | |
Tsu08g04058 | 08 | 58816353 | 58819111 | Tsu02g01947 | 02 | 18449574 | 18453344 | ECH | |
Tsu02g01947 | 02 | 18449574 | 18453344 | Tsu08g04058 | 08 | 58816353 | 58819111 | PCT |