Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04052 ATGGAAGACGAGGAGGAGCAAGAAACTGCAGTTGAGGAGAAAGATAAAGACAAAGACGAGGTTCCAAATTCTCTTCTCGATGCGGATAAACATAGCAAAGATTCAAGCCAGCATATGGAGCTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTGCCCGAGAACCCTGAAGTAATACGGCCAGAACATGATATGGATGAGAATGATGCCATGCTTAACGCATCTGTTCCATCACATGAGGAATTGACATTGAAAAAGGAGGAGTTCCCCGTGAAACAAGAAGTTTTGAGTCCTCCAAAACCAAGTGAAAACTTGATTCCCGCTGAAGATGGGAAAAATCAAGGCTTAAACGTTGATGTTGAAAATTCTGGATATCTTCTTCAGAGGAAAACCTTTGGAGGATGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGACATTGATTCTAGGGCCACCAAGGCATCTAGTGATACAGGAAAAGATGCGGTTACTGGAATCATACCGAGAGATAATTTTGTTGAAGATGCTGATGGTGGTCAGAACTCTCAGGAGAAAATTATGCAGTCAGGGATGGAGCCACGGGTTGATGTGAAACAAAAGCAGTCAAGTAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAAAGACCTGCAATTACATGTGCTTTTTTCGCTCAAGGTTGGTGCATCAGAGGCAGTTCCTGTAGCTTTCTTCATATAAAGGATAGTGTGAATAATACCGACCAGGGGGTTGAAGGAAATCTAGTTACTGCACATCAGAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAACGTTGACAGGTCAAGAACGAATGACGGAGAAGCAAGTCCAAGTTGGCATTCATCTCGTGAAAAAGAGAAGTTTCCAATGAGGGACAGCTTGTTTCCAGAGAATAGATCTGCATTTAATACATCAAACAATTATTTTGGCTCAAATCTTTCCTCATTTTCATCCCGTGAAGAGGGAATGGCTGCTATTCGAAACCATCATATGTACAGAGGATATACATCCAGAGAAGATTTTAGTTCATCTTTAGGTGCAAGTGCTTGGGACTCTCAAAAGGTTTTGAACAGTGAGAAGGAATATCACGCCCATAAGTCCACTTTCTCTTCAGGTTGGGAAGATTTGCATCTAGTTGGTTCATCTAAGGTTCCACCACATGCTAATGGATATAAACAAAAAACCGGCTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCCTCCTTTTTTATCACTTCTATGAATGTATCATCCCCCGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATTGGAGATGGGTCTTTGAAAGCTTTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAAGTGCGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCTGATCATAATGATGACAAAAGTTCTGTATCTTCACATAATAAGTTTTATGAAAATGAGCCAAACAGAAGTTCTGTTCCTCGTGGAAATGATTCTCTTGCAACCAAAACAGAGATAACATCAGGAACTTGTGCAAACTACCATAATGATAACATAGATGTGGGACAACATGCCTTTGGTGTTGAAGATAGGATGGAAACAGCGAAGAAACAAACTGAGCATGATGTGATGCATCATGGTGATGGATCAGAGCACATAAAGAAGAGAATAGCAATGGATAATAAAATTCATGAAATGGAGGTTGACTTTTCGACGGATAGCAGTGTGCACAAAGAAACAAAGGCGCTGAAATTTTTTCGTGCAACCCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTGTCAGCAAGGATGCACATGTACTGATAGTTAAGAAATCAGTTGACAAGGTTATTAACACTTTAGAGCCACACCAAATTCCGATCACTGAAGATAATGCTAAGCAATATGTTTCTTCATGTCGGCCGAAAATTGCAAAGTTAGTCCAGGGATATGTCAATAAATATAGCAAATCTTGA 2064 0.405 MEDEEEQETAVEEKDKDKDEVPNSLLDADKHSKDSSQHMELDVKEENLGPVSSVPENPEVIRPEHDMDENDAMLNASVPSHEELTLKKEEFPVKQEVLSPPKPSENLIPAEDGKNQGLNVDVENSGYLLQRKTFGGCSEPDCNSKASLSDVKDIDSRATKASSDTGKDAVTGIIPRDNFVEDADGGQNSQEKIMQSGMEPRVDVKQKQSSRTRSLSPSAEIKDGNKRPAITCAFFAQGWCIRGSSCSFLHIKDSVNNTDQGVEGNLVTAHQKRELKLEKGVKENVDRSRTNDGEASPSWHSSREKEKFPMRDSLFPENRSAFNTSNNYFGSNLSSFSSREEGMAAIRNHHMYRGYTSREDFSSSLGASAWDSQKVLNSEKEYHAHKSTFSSGWEDLHLVGSSKVPPHANGYKQKTGSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKAFLIRGSSIQASSQVRTYDDSAAVGKHMSDHNDDKSSVSSHNKFYENEPNRSSVPRGNDSLATKTEITSGTCANYHNDNIDVGQHAFGVEDRMETAKKQTEHDVMHHGDGSEHIKKRIAMDNKIHEMEVDFSTDSSVHKETKALKFFRATLVDLVKELLKPFWHEGRVSKDAHVLIVKKSVDKVINTLEPHQIPITEDNAKQYVSSCRPKIAKLVQGYVNKYSKS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04052 687 MobiDBLite consensus disorder prediction 504 521 - -
Tsu08g04052 687 MobiDBLite consensus disorder prediction 487 521 - -
Tsu08g04052 687 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Tsu08g04052 687 MobiDBLite consensus disorder prediction 1 119 - -
Tsu08g04052 687 MobiDBLite consensus disorder prediction 281 308 - -
Tsu08g04052 687 MobiDBLite consensus disorder prediction 11 45 - -
Tsu08g04052 687 ProSiteProfiles Zinc finger C3H1-type profile. 226 253 IPR000571 GO:0046872
Tsu08g04052 687 MobiDBLite consensus disorder prediction 146 162 - -
Tsu08g04052 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 250 IPR000571 GO:0046872
Tsu08g04052 687 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 5 687 - -
Tsu08g04052 687 MobiDBLite consensus disorder prediction 134 222 - -
Tsu08g04052 687 MobiDBLite consensus disorder prediction 487 503 - -
Tsu08g04052 687 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 5 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04052 Tsu-Chr8 58783125 58788520 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g04052 zf-CCCH 6.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04052 - - cam:101503101 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04052 08 58783125 58788520 Tsu08g04052 08 58783125 58788520 ECH