Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04049 ATGgcttcttcgtcttcttcgGGAAACCGTGAAGGACACTACAGAGGTGTTAGAAAGCGACCATGGGGACGCTATGCTGCTGAGATTCGTGATCCATGGAAAAAGACACGTGTTTGGTTAGGTACATTTGATACACCTGAAGAAGCTGCTCTAGCTTACGACGGCGCCGCTCGTTCTCTCCGTGGAACTAAAGCTAAAACTAACTTTCCACCGGCGCCGGGAGCCGGTGGTCTATGTGTTGATCTCAATCTCAACGCTCCTTCTTCTGATCTTAATCTTAGGTGGCCATCTGTTGCTTCGCGTGGGATTAAGCTTACTGAGTTTCTTCAAACTGGTGTTCTTAAGGATTTCAACGCTCCTCAGCCTCCTCCTCAACCTCAACCTCCTCTTGTCACGGTGGCTGGACAGAGACACGGTGAAGGTACTTTTGGTGTTTCTGGGAGAGTTATGGTGGCTGAGAACTCTCCGACTGCTGCTTATTTGGGTCTTGTTAGACGTGGGATTCCGATTGACTTGAATGAACCACCACCTTTGTGGCTGTga 543 0.4751 MASSSSSGNREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGTKAKTNFPPAPGAGGLCVDLNLNAPSSDLNLRWPSVASRGIKLTEFLQTGVLKDFNAPQPPPQPQPPLVTVAGQRHGEGTFGVSGRVMVAENSPTAAYLGLVRRGIPIDLNEPPPLWL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04049 180 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Tsu08g04049 180 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Tsu08g04049 180 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Tsu08g04049 180 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Tsu08g04049 180 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Tsu08g04049 180 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Tsu08g04049 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 166 - -
Tsu08g04049 180 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Tsu08g04049 180 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Tsu08g04049 180 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04049 Tsu-Chr8 58754450 58755382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04049 4 180 AP2-EREBP Transcription Factor Family AT1G28360 48.000 1.91e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g04049 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04049 - - cam:101504196 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04049 08 58754450 58755382 Tsu08g04049 08 58754450 58755382 ECH