Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04048 ATGGCGCCGAAGGTTAAGAGCGGTGGCGTTAAGATTAACGCTAACGATAACGGCGTTAAGGAGACGCATTTTAGAGGAGTAAGAAAGAGGCCATGGGGAAGATACGCCGCCGAGATCAGAGATCCAGGCAAGAAAAGCCGTGTTTGGCTCGGAACTTTCGACACGGCGGAAGAAGCGGCGAGAGCCTACGACAAAGCCGCATTTCAATTTCGCGGTTTGAAGGCTAAAACAAACTTTCCTTTTCATATTCAGAGTCCTAGCCAAAGCAGCACCGTTGAATCCTCTAGCCGTGATCGTGACGCTGCCGCTGATTCTTCACCGCTTGATCTGAACTTAGCTCCTTCGATTAACGGTCCTGTTCGGTTTCCGTTTCAGCATAGGTATACTCCGATGCCGGTTGTTAATCAGACGTTTTGCTTTGATGATGTTCTACGCGCCGGTATGGTGAATTACGGTTATGCAACGGCGGCACCAGCACAGAGTGATTCAGATTCTTCGTCGGTGATTGATCTGAACCACCGTGATGACGGTGTTAAACGTGTTAGAAATTTGGATCTAGATCTTAACTACCCTCCTCCGGAATATACGCTATAA 594 0.4848 MAPKVKSGGVKINANDNGVKETHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDKAAFQFRGLKAKTNFPFHIQSPSQSSTVESSSRDRDAAADSSPLDLNLAPSINGPVRFPFQHRYTPMPVVNQTFCFDDVLRAGMVNYGYATAAPAQSDSDSSSVIDLNHRDDGVKRVRNLDLDLNYPPPEYTL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04048 197 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Tsu08g04048 197 MobiDBLite consensus disorder prediction 81 110 - -
Tsu08g04048 197 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Tsu08g04048 197 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Tsu08g04048 197 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Tsu08g04048 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 85 180 - -
Tsu08g04048 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 84 - -
Tsu08g04048 197 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Tsu08g04048 197 MobiDBLite consensus disorder prediction 81 96 - -
Tsu08g04048 197 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Tsu08g04048 197 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Tsu08g04048 197 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Tsu08g04048 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 85 180 - -
Tsu08g04048 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04048 Tsu-Chr8 58724435 58725698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04048 6 193 AP2-EREBP Transcription Factor Family AT5G44210 44.041 2.42e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g04048 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04048 K09286 - gmx:100170742 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04048 08 58724435 58725698 Tsu08g04048 08 58724435 58725698 ECH
Tsu02g04350 02 52074781 52075889 Tsu08g04048 08 58724435 58725698 ECH
Tsu02g02901 02 31918683 31920025 Tsu08g04048 08 58724435 58725698 ECH