Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04038 ATGGGTTTGGATTACTATGAGATTTTGGAGGTTGAAAAGAATGCAACAGAAGAAGAGTTGAAAAAAGCTTACAGAAAACTTGCTATGAAATGGCACCCTGATAAAAATCCCAGCAATAACAAAGATGCTGAGACTAAATTCAAACTCATATCTGAAGCATACGAGGTTCTAAGTGATCCACAAAAGAGAGCGATTTATGATCAATATGGAGAAAGCGGACTTAAAAACGGAATGGCACCAACAGATGAAGGTGCAGCTTCATACTTCCAAACTCCGGATGGCAGAAGGTTTAGATTCAATCCCAGAAGTGCAAATGGGATCTTTGCAGAAGCTTTTGGTTTTTCAAGCCCATGTGGAGGAATGGGAATGAGGGGCGGCGGCTGCAGAGGCATGAGAGGTCGTTCGTGGGTGTCAAGTGCCTTCGGTGATATTTTTGGCCAAGACATGTTCGCAGAAAGCAGACAAGCGAGCCAAGTTCCAAGGCGCAAGGCACCTCCCATTGAAAATAAATTACCTTGCAGTCTTGAGGAGCTTTATAAAGGTACTACAAAAAAGATGAAGATCTCAAGGGAAATTGCATATGCAAGCGGCAAAACTCTACCTGCGGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACATTCCCGGAGAAAGGAAATGAGCAACCAAATGTAACTGCTGCAGATATTGTATTCATTATTGATGAGAAACCACACAGTGTATTTACAAGAGAAGGTAATGATTTGGTTGTGACACACAAGATATCACTTGCAGAAAGTGAATCTCTAACCAGAAGCTACACTTTCCAACTTACTACTTTGGATGGAAGGGATCTGACCATTACCATACACAATTTAATTGATCCAACCTATGAAGAAGTGGTCGCCGGAGAAGGGATGCCAATTTCCAAAAAGCCTTCACAGAAGGGTAATCTTAGGATCAAATTCAACATCACATTCCCAAGCATGGTTCAAGCTGAAACAGAAAGCCAGAATTAA 1020 0.4147 MGLDYYEILEVEKNATEEELKKAYRKLAMKWHPDKNPSNNKDAETKFKLISEAYEVLSDPQKRAIYDQYGESGLKNGMAPTDEGAASYFQTPDGRRFRFNPRSANGIFAEAFGFSSPCGGMGMRGGGCRGMRGRSWVSSAFGDIFGQDMFAESRQASQVPRRKAPPIENKLPCSLEELYKGTTKKMKISREIAYASGKTLPAEEILTIEIQPGWKKGTKITFPEKGNEQPNVTAADIVFIIDEKPHSVFTREGNDLVVTHKISLAESESLTRSYTFQLTTLDGRDLTITIHNLIDPTYEEVVAGEGMPISKKPSQKGNLRIKFNITFPSMVQAETESQN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04038 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 334 IPR008971 GO:0006457|GO:0051082
Tsu08g04038 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 257 IPR008971 GO:0006457|GO:0051082
Tsu08g04038 339 CDD DnaJ 4 59 IPR001623 -
Tsu08g04038 339 SUPERFAMILY Chaperone J-domain 4 73 IPR036869 -
Tsu08g04038 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Tsu08g04038 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Tsu08g04038 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Tsu08g04038 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Tsu08g04038 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Tsu08g04038 339 Pfam DnaJ domain 4 67 IPR001623 -
Tsu08g04038 339 CDD DnaJ_C 165 329 - -
Tsu08g04038 339 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 335 - -
Tsu08g04038 339 SMART dnaj_3 3 62 IPR001623 -
Tsu08g04038 339 Gene3D - 246 329 - -
Tsu08g04038 339 Pfam DnaJ C terminal domain 167 328 IPR002939 -
Tsu08g04038 339 Gene3D - 166 244 - -
Tsu08g04038 339 Coils Coil 6 26 - -
Tsu08g04038 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Tsu08g04038 339 Gene3D DnaJ domain 3 156 IPR036869 -
Tsu08g04038 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04038 Tsu-Chr8 58624841 58627280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04038 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.54e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04038 K09510 - gmx:100794650 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04038 08 58624841 58627280 Tsu08g04038 08 58624841 58627280 ECH