Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04032 ATGCTTCCTCTTCCCCTATTCCTTTTCtcctttctcttcttcctcctccttCAACCACCAACTATTTCCTCTCTCTCACAAGAAGGTCTCTACCTACACCAATTCAAACTCTCCGTAGACGATCCTTCCTCTTCTCTCTCCACCTGGAACAACCGTGACCAAACACCATGCAACTGGTCCGGTATAACCTGCGAcgaaaaaacaaacacaaccgTAACAAAAATCAACCTCTCAAATTTCAACCTCTTTGGTCCACTTCCAACTTCAATACTATGTCGTTTAACAAATCTCACTACACTAATCTTAACAAACAATTCCATCAACCAAACACTCCCTTTAGATATTTCTCTTTGCACCTCCCTTATTCATTTAGACCTCTCTCAAAATCTACTCACTGGTACACTCCCCCACACTCTATCAAATCTCGTTAACCTCCGTTATCTTGACTTAACGGCTAACAACTTTTCCGGTGAAATTCCTAACTCCTTCGGAACATTCCAGAAACTTGAAGTTATTTCGTTAGTTTTTAATCTTCTAGATTCTTCTATTCCTGCTTCTCTCGGAAACATAACTACTTTGAAAACTCTTAATCTCTCTTTTAATCCTTTTCAACCGTCGCTTATTCCGCCGGAGATCGGAAACCTAACTAACCTTGAGATTCTATGGCTTAGTTCATGTAATCTTGTAGGTGTTATTCCTGATTCGTTTAGGAAGTTGAAGAAACTAAGTGTTTTTGATCTTTCTATGAATAATCTTGAAGGTTCTATTCCGAGTTCGCTCACTGAAATGACGAGTTTGAAGCAGATTGAGCTTTATAATAACTCGTTTTCCGGTGAGTTACCTGCCGGAATGTCGAATCTTACTTCGTTGAGGCTTATTGACGTTTCGATGAATTCTATTGGTGGTGTTATTCCTGATGAGTTGTGTAGATTACCGCTTGAGAGTCTTAATCTTTATGAGAATCGGTTTACCGGTGAGGTGCCGGCGAGTATTGCTGACTCGCCGAACTTATATGAGTTTAAGATTTTTACGAATTTTCTCACAGGCGAGTTGCCGGAGAATTTAGGGAAGAATGGTCCGTTGATATGGTTTGATGTTTCGAATAATAAATTCTCCGGTAAGATACCGGTGAGTTTGTGTGAGAAGGGAGCGTTGGAGGAGTTATTGATGATACATAATTCGTTTTCCGGGGAGATTCCGGAGAGTTTGGGTAGGTGTCGGACATTGGCGCGTGTTAGGTTGGGTTTTAATAGGTTGTCCGGTGAAGTTCCGGTGGGTTTCTGGGGTCTGCCGCATGTGTATCTTCTTGAACTTGTTGATAACTTGTTTTCTGGTTCAATTGCTAAGACTATTGGTGGAGCTGGGAATTTGTCTTCGTTGACTTTATcgaataataatttttctggTGTGATTCCTGAAGAGATTGGAAGGTTGGAAAATCTTTTGGAATTTTCTGGTGGTAATAATAAATTCAACTCTTCTTTGCCTGAGAGTATTGTGGATCTTTCCCAGCTTGGGATTCTTGATCTTCACAATAATAATCTCTCAGGGGAGCTTCCAAAAGGGATTCAATCTCTTAAGAAACTCAATGAGTTAAATTTGGCTAATAATGAGATTGGTGGGAAAATTCCCGAAGAAATTGGGAGTATGTCTGTGCTAAACTTTCTTGATCTTTCTGATAATCGATTTTCCGGAAATGTTCCTTTGAGTTTGCAGAATTTGAAGCTCAATCAGCTAAATTTGTCTTACAATAGTCTTTCTGGAGAGATTCCACCTCTTATGGCTAAGGATATGTATAGGGATAGTTTTATCGGTAATCCGGGTTTGTGTGGAGATTTGAAAGGTTTGTGTGATGTCAAAGGGGAGGGTAAGAGTACAGATTTTGTTTGGTTGCTTAGAACTATTTTCATAGTTGCAATTTTGGTTTTAGTCTTTGGTGTGATTTGGTTCTACTTCAAGTACATGAATATCAAGAAAGGTAGATCTATTGATAAAACGAAATGGACATTGATGTCGTTTCATAAACTGGGTTTTGGTGAAGACGAGGTCTTGAATTGCCTTGATGAAGATAATGTCATAGGAAGTGGATCGTCCGGGAAAGTCTACAAGGTTGTGCTTCGCAACGGAGAGTCTGTTGCCGTTAAGAAAATATGGGGTGGGGTCAGAGTGGAAGCAGAGAGTGGAGATATTGAAAAGAATCAATTTCAAGACAACGCTTTTGATGCAGAGGTGGAAACTTTGGGTAAGATTAGGCACAAGAACATTGTCAAGCTATGGTGTTGCTGTACCACAAGGGATTGCAAGCTATTGGTTTATGAGTATATGCCAAATGGTAGTCTTGGCGATATGCTTCATAGCAGTAAAGGAGGGTTATTGGATTGGCCAACTAGGTATAAGATAGCTCTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCACGACTGTGTTCCTCCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGACGAAGAGTTTGGCGCAAGGGTTGCAGATTTTGGGGTAGCTAAGGTGGTCGAATCCAATGGGAAAGGAACTAAATCCATGTCTGTGATAGCTGGCTCTTGTGGGTATATTGCACCAGAATATGCATACACACTTAGAGTGAATGAGAAGAGTGACATATATAGTTTTGGTGTTGTTATCCTTGAGTTAGTCACTGGAAGGAAGCCAGTAGATCCTGAATTCGGGGAAAAAGATTTGGTTATGTGGGCATGTAACACCTTGGATCAGAAAGGTGTTGACCATGTACTTGACTCACGACTCGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACTAGAGATAGGAGGCACGGATAGCCAAACCAAGTCTTCCCTGAAAGCTGGAAAGTTGTCACCATATTACTATGATGATGCATCAGATCATGGAAGTGTTGCCTAA 3006 0.3982 MLPLPLFLFSFLFFLLLQPPTISSLSQEGLYLHQFKLSVDDPSSSLSTWNNRDQTPCNWSGITCDEKTNTTVTKINLSNFNLFGPLPTSILCRLTNLTTLILTNNSINQTLPLDISLCTSLIHLDLSQNLLTGTLPHTLSNLVNLRYLDLTANNFSGEIPNSFGTFQKLEVISLVFNLLDSSIPASLGNITTLKTLNLSFNPFQPSLIPPEIGNLTNLEILWLSSCNLVGVIPDSFRKLKKLSVFDLSMNNLEGSIPSSLTEMTSLKQIELYNNSFSGELPAGMSNLTSLRLIDVSMNSIGGVIPDELCRLPLESLNLYENRFTGEVPASIADSPNLYEFKIFTNFLTGELPENLGKNGPLIWFDVSNNKFSGKIPVSLCEKGALEELLMIHNSFSGEIPESLGRCRTLARVRLGFNRLSGEVPVGFWGLPHVYLLELVDNLFSGSIAKTIGGAGNLSSLTLSNNNFSGVIPEEIGRLENLLEFSGGNNKFNSSLPESIVDLSQLGILDLHNNNLSGELPKGIQSLKKLNELNLANNEIGGKIPEEIGSMSVLNFLDLSDNRFSGNVPLSLQNLKLNQLNLSYNSLSGEIPPLMAKDMYRDSFIGNPGLCGDLKGLCDVKGEGKSTDFVWLLRTIFIVAILVLVFGVIWFYFKYMNIKKGRSIDKTKWTLMSFHKLGFGEDEVLNCLDEDNVIGSGSSGKVYKVVLRNGESVAVKKIWGGVRVEAESGDIEKNQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDMLHSSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDEEFGARVADFGVAKVVESNGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRKPVDPEFGEKDLVMWACNTLDQKGVDHVLDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLLEIGGTDSQTKSSLKAGKLSPYYYDDASDHGSVA 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04032 1001 Pfam Protein kinase domain 689 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04032 1001 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Tsu08g04032 1001 Gene3D Ribonuclease Inhibitor 282 380 IPR032675 -
Tsu08g04032 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Tsu08g04032 1001 Pfam Leucine rich repeat 217 275 IPR001611 GO:0005515
Tsu08g04032 1001 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Tsu08g04032 1001 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04032 1001 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Tsu08g04032 1001 SUPERFAMILY Protein kinase-like (PK-like) 683 967 IPR011009 -
Tsu08g04032 1001 Gene3D Phosphorylase Kinase; domain 1 672 774 - -
Tsu08g04032 1001 PANTHER LRR RECEPTOR-LIKE KINASE 8 980 - -
Tsu08g04032 1001 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 980 - -
Tsu08g04032 1001 Gene3D Transferase(Phosphotransferase) domain 1 775 987 - -
Tsu08g04032 1001 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515
Tsu08g04032 1001 SUPERFAMILY RNI-like 74 422 - -
Tsu08g04032 1001 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Tsu08g04032 1001 SMART serkin_6 687 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04032 1001 SUPERFAMILY L domain-like 385 610 - -
Tsu08g04032 1001 SMART LRR_typ_2 215 238 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 142 168 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 526 550 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 502 525 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 287 311 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 94 118 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 455 478 IPR003591 -
Tsu08g04032 1001 SMART LRR_typ_2 239 263 IPR003591 -
Tsu08g04032 1001 Gene3D Ribonuclease Inhibitor 384 622 IPR032675 -
Tsu08g04032 1001 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04032 Tsu-Chr8 58586957 58591134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04032 20 1001 Receptor kinase-like Gene Family AT1G28440 67.814 0.0 1371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu08g04032 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04032 - - gmx:100776936 1507.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04032 08 58586957 58591134 Tsu08g04032 08 58586957 58591134 ECH
Tsu08g04032 08 58586957 58591134 Tsu02g01985 02 19192879 19197239 ECH