Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04028 ATGAGTCTTGTAGAGCATATTGCTTATGACACAATCATGATAATTCTATCAATATCTCTGATAATTCTTGGTATTACCCTCTATTTCGCTTGCAAGAAGAAACCGGTTGAATCAGAAGAAACACTTCCAGTGAAACACAGTGCTCATGCATACCCTTTAACAGAAATTGATGTTGCTACAAATGGCTTCAACCATAGGAGAATCATTGGAAAGGGCCGTTTGGGAACAGTTTATGCAGGAAAACTAGAAGATGAAGAGGTTGTAGCTGTGAAACGCATTCACCCGGTTCTTGTATTAAGCAACGCGGGATTTGGGTTCTCATCAGTGATGAAATGGCTTTCTTTAGCTCAACACCCTAACGTCGTTCCCATAATTGGATTCTCAGAAGCGCCAGGCGAAAGAGTTATAGTGATGGAGTTTGTTCGAATGGCGAATTTGGAATTTTACTTGCATGAAAATCATGACGGTTGTTCATCTTCACTTTTGGATTGGAACAAGAGGTTTAAGATTGCAGCTGGAGTAGCTAAAGGGCTACAATATCTTCATGAAGTGGTAGCACCAAATATTGTACATGGTTGTATCAAGTCATCTAATGTTCTTATTGATGTTAATTTTTGTGCTAAGATATCTGATTATGGACTTAATTTTTTAGGGGGTGTAGAAAAGAGAGGATTAATTGGTTATGTTGATGATGAATATTGGAATCAAGGAATTAGGGGTGGTAGTGTTAGCAAGGAAAGTGATGTTTATGGTTTAGGGGTAGTTTTGTTAGAGCTTTTAAGTGGAAGAGGATGTGAGGGTGGATTATTGGTGAAATGGGCTTTGCCTTTGATTAAGGATATGAGATATAGTGAAGTTTTGGATCCTAAGTTGATGATTCCTTCTAATATGAAGGCTATTGTTAGATTAGCAAAAGTTGCTTTAGCTTGTGTTGGTAATTCAAGAAAATGTAGGCCTTGTGTGAATCATGTGGCAAACATTTTGAATGATTTAGAGACAGAAGTGTGCCTCTTATCAAGTTGA 1023 0.3773 MSLVEHIAYDTIMIILSISLIILGITLYFACKKKPVESEETLPVKHSAHAYPLTEIDVATNGFNHRRIIGKGRLGTVYAGKLEDEEVVAVKRIHPVLVLSNAGFGFSSVMKWLSLAQHPNVVPIIGFSEAPGERVIVMEFVRMANLEFYLHENHDGCSSSLLDWNKRFKIAAGVAKGLQYLHEVVAPNIVHGCIKSSNVLIDVNFCAKISDYGLNFLGGVEKRGLIGYVDDEYWNQGIRGGSVSKESDVYGLGVVLLELLSGRGCEGGLLVKWALPLIKDMRYSEVLDPKLMIPSNMKAIVRLAKVALACVGNSRKCRPCVNHVANILNDLETEVCLLSS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04028 340 Pfam Protein tyrosine and serine/threonine kinase 66 327 IPR001245 GO:0004672|GO:0006468
Tsu08g04028 340 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04028 340 Gene3D Transferase(Phosphotransferase) domain 1 143 336 - -
Tsu08g04028 340 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 336 - -
Tsu08g04028 340 SUPERFAMILY Protein kinase-like (PK-like) 38 328 IPR011009 -
Tsu08g04028 340 Gene3D Phosphorylase Kinase; domain 1 26 140 - -
Tsu08g04028 340 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04028 Tsu-Chr8 58538822 58540143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04028 40 328 Receptor kinase-like Gene Family AT3G59420 36.424 1.22e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Tsu08g04028 PK_Tyr_Ser-Thr 2.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04028 - - mtr:MTR_2g014650 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04028 08 58538822 58540143 Tsu08g04028 08 58538822 58540143 ECH