Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04027 ATGGCTAAACTTTTGAGTGTTGTTTCTCCTTTATATATTTCGGCTGAGTTGGATATCCGTTTAAAGATATGTGATCTTCTTGATGATCTTGTAAAGTATGATGCATCTGTACTCTCGGTGGCTAAACTTCTTCGTCGGTTGAATACAACATCTAATTTGGGTTGCCTTGATCAAGATTTTATTTTGGATGCTTACAGAATCATCAATACTGATTTCTTCAGAAATTGTCAAGCGGAGCATGCATTGCTTATTTTATCACACTGTGTGCTTGACATGTCCTCAGAAGAAATGACTTTTTTGTGTAGTGCACAGAGATCATTGCTATCTTTTGTTGATTTGTCTGCACTCGTCCTTTTGCAAGAAGGAAGCAGTGAACAAGAGTCGTCTAAGAAAAAGTGTGAGCATCAAGGAGAGATTAATTGGAAAATGACTTGGTGCATTGACTCTAATCATGAGGAGGATGAATTAATCACTCCATCTaaagataataacaacaacacTGATGTTAGTTATAATCACATGAAGCTCAATGAAGAAATTCAAATCATAAAATGTCCTTCATGTAACCATACCATTGAAATCAATAAAGAACAgGGTGGAATTCATGATTTGCCTGGGTTACCAGCTGGAGTAAAATTTGATCCAAATGACATAGAAATATTACAACATTTGGAAGCAAAAGTGATGTCTGATGTGTGCAAAATTCATCCACTTATTGATGAGTTCATACCAACACTTGAAGGAGAAAATGGAATTTGCTATACACACCCTGAAAAATTACCagGAGTCAACAAAGATGGACAAATCCGCCATTTTTTCCATAGACCATCAAAAGCATACACAACAGGAAcaaggaaaagaagaaaagttcACACTGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACAGGAAAAACTAGAGCAATTTTTGTTAATGGTATTGTGAAAGGTTATAAAAAGATACTAGTACTCTACACAAACTATGGCAAACAAGGAAAACCAGAGAAAACTAATTGGGTTATGCATCAATATCATCTTGGTAGtaatgaagaagaaagagatgGAGAATTAGTTGCTTCAAAAGTGTTCTACCAAACACAACCTAGACAAAGTGGTAATTCCATTAGTAGTAATGTAAGAGATTCAATACCTAACAATTTAGGTATTGTGGAATGTTACAATGATCCTTATACAAGTTATGACCAAAGGGAAAGATCCTCACAATTTAGTCCAAATTTGGTTGTCCAAGGTGATGGATCTATTATTAGGTTAGCAATGCCAATGGATGCAAACAAAGTAAGAGTAGTGGAGAGAAAGTGA 1323 0.3386 MAKLLSVVSPLYISAELDIRLKICDLLDDLVKYDASVLSVAKLLRRLNTTSNLGCLDQDFILDAYRIINTDFFRNCQAEHALLILSHCVLDMSSEEMTFLCSAQRSLLSFVDLSALVLLQEGSSEQESSKKKCEHQGEINWKMTWCIDSNHEEDELITPSKDNNNNTDVSYNHMKLNEEIQIIKCPSCNHTIEINKEQGGIHDLPGLPAGVKFDPNDIEILQHLEAKVMSDVCKIHPLIDEFIPTLEGENGICYTHPEKLPGVNKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAIFVNGIVKGYKKILVLYTNYGKQGKPEKTNWVMHQYHLGSNEEERDGELVASKVFYQTQPRQSGNSISSNVRDSIPNNLGIVECYNDPYTSYDQRERSSQFSPNLVVQGDGSIIRLAMPMDANKVRVVERK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04027 440 Pfam Down-regulated in metastasis 4 115 IPR011430 -
Tsu08g04027 440 Pfam No apical meristem (NAM) protein 208 347 IPR003441 GO:0003677|GO:0006355
Tsu08g04027 440 SUPERFAMILY NAC domain 202 366 IPR036093 GO:0003677|GO:0006355
Tsu08g04027 440 ProSiteProfiles NAC domain profile. 207 366 IPR003441 GO:0003677|GO:0006355
Tsu08g04027 440 MobiDBLite consensus disorder prediction 281 301 - -
Tsu08g04027 440 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 143 421 IPR044799 GO:0003700
Tsu08g04027 440 MobiDBLite consensus disorder prediction 286 301 - -
Tsu08g04027 440 Gene3D NAC domain 217 370 IPR036093 GO:0003677|GO:0006355
Tsu08g04027 440 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 143 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04027 Tsu-Chr8 58504364 58510868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04027 143 378 NAC Transcription Factor Family AT4G28500 67.782 5.86e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu08g04027 NAM 9.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04027 - - cam:101512871 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04027 08 58504364 58510868 Tsu08g04027 08 58504364 58510868 ECH
Tsu08g04027 08 58504364 58510868 Tsu02g01986 02 19232016 19236388 ECH