Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04020 ATGGGGTTAATCGATCTCAACACTACTGAGGAAGATGAAACTCCTTATTCAGctatttcttcttcctcttcttcttctcaatcTGGTATAAGTACTTCTGCTTCAGCTATGGTTGTTCCTCTTCAAACTTCTGTTTGTTTGGAACTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTACCAAAGAAAGGAAGCATTGTTGTTTATGTTCCACAAGGACACTTTGAACAAGCTCATGATTTTCCTGTTTCTGCTTGTAATATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTTCATGCAGAGGAAGGAAGTGATGAAGTGTATTGCCAAGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTTCGTGAAGGGGTAATCGATGTTGATGCGGAAGAGGAGGATGCTGAAGCTATTGTAAAGTCGACAACACCTCATATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGACCTTCACAAGAGCTTGTAGCTAAGGATCTGCATGGCTTGGAGTGGAGGTTTCGTCACATATATAGGGGGCAGCCGAGGAGGCATTTGCTGACAACCGGGTGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGTGATGCTGTGTTGTTTCTTAGGGGTGATGATGGAGAACTGAGACTAGGGATTCGAAGGGCGGTGCAGTTAAAAAATTCTGGTTCCTTTGCAGCTCCTTCTTGTATGCAATTGGATCCTGGCTCTCTCATGGATGTTGTGAATGCCTTATCTAAAAGATCTGCTTTCAGCGTTTGCTATAATCCGAGGGTCAGTTCTTCGGAATTCATCATACCTGTCAACAAATTCATGAAGAGCCTTGATTGTTCTTTTTCTGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGATTTACTGGATTAATTGCTGGGATAAATGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTGTTGGTAAGGTGGGATGACATAGAAGCATCAAGGCATAATAGGGTTTCCCCTTGGGAAATCGAGCCATCTGGTTCTGCTTCCAGCAACCTCATGGCAGCTAGTTTGAAGAGGACCAGGATTGGAATCACTTCAGGGAAGCTAGAATTTCCAGTTCCCAATGGGATTGGAGCGTCAGACTTTGGGGAATCTTTGAGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATTAATACTCCCTATGACAGTATTAATGCTCAGAGTCCCCGGTTATATGAGCTAGGGAGATGCTATCCCGGTTCAAACTGTTCCGGGATTGCTGCAACAGGAAATATCAGAATGGCGCAAGCTACTTCTGATTTTCCAGGTAACAGCACAGGCTTTAGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCATGTCCACCCTACGGTCGAGCCTCATTTGACGAGACCCGTGGAAATGGTTGCTTTGGACGTTATGATGGTTATCAACTTCTCGGCTCCAGAAATGGATGGCCTGCACAGATGCATGACAGTTCTTCACATTTGCATGCATCTGTCACAGCTGGACAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCATGCCGTTAATCCAGTTTCAAACTCTCGTTATGATATTGGTAATCGCAATCAGGCTTCATACTTATCCGAAGCGAAAAATGGAATGTTTGCGCCTGCCATATCCGACAAACCTATCTTCTCTAGTGGACTAGCTCAAGAAGGCATAAATTCTTTCAGTGCGAATAATTTTCTCAATAATAGTCAATTTGACAGTTCAAGGTCTCGTGATTCGGTGTCAACACTGAGAGGCAATCAAGATATGGTTTCGTCATGTAAAACTGGCTGCAGACTCTTTGGATTTTCATTAACTGATGACACGCATGTCGGAAATACAGAGGCTGCTGTTGCCTCTAACATCACTTCTCGATTCAATAAGGACTACGGTGGCGGCTGA 2082 0.4352 MGLIDLNTTEEDETPYSAISSSSSSSQSGISTSASAMVVPLQTSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDVDAEEEDAEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKNSGSFAAPSCMQLDPGSLMDVVNALSKRSAFSVCYNPRVSSSEFIIPVNKFMKSLDCSFSVGMRFRMRFETEDAAERRFTGLIAGINDVDPVRWPGSKWKCLLVRWDDIEASRHNRVSPWEIEPSGSASSNLMAASLKRTRIGITSGKLEFPVPNGIGASDFGESLRFQKVLQGQEIMGINTPYDSINAQSPRLYELGRCYPGSNCSGIAATGNIRMAQATSDFPGNSTGFSESFRFQKVLQGQEILPCPPYGRASFDETRGNGCFGRYDGYQLLGSRNGWPAQMHDSSSHLHASVTAGQVSSPSSVLMFQHAVNPVSNSRYDIGNRNQASYLSEAKNGMFAPAISDKPIFSSGLAQEGINSFSANNFLNNSQFDSSRSRDSVSTLRGNQDMVSSCKTGCRLFGFSLTDDTHVGNTEAAVASNITSRFNKDYGGG 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04020 693 PANTHER AUXIN RESPONSE FACTOR 37 683 - -
Tsu08g04020 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g04020 693 SUPERFAMILY DNA-binding pseudobarrel domain 146 260 IPR015300 -
Tsu08g04020 693 CDD B3_DNA 151 253 IPR003340 GO:0003677
Tsu08g04020 693 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Tsu08g04020 693 MobiDBLite consensus disorder prediction 10 27 - -
Tsu08g04020 693 MobiDBLite consensus disorder prediction 1 27 - -
Tsu08g04020 693 SMART B3_2 153 255 IPR003340 GO:0003677
Tsu08g04020 693 Gene3D - 316 390 - -
Tsu08g04020 693 Pfam Auxin response factor 280 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu08g04020 693 Gene3D - 151 255 IPR015300 -
Tsu08g04020 693 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04020 Tsu-Chr8 58462160 58467453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04020 152 507 B3 DNA Binding Superfamily AT2G33860 60.111 4.18e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g04020 B3 3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04020 K14486 - gmx:100789906 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04020 08 58462160 58467453 Tsu08g04020 08 58462160 58467453 ECH