Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04010 ATGGCAATGGCTGCTGTTGGTGAAGCTTTCCTCTCTGCTTTCATTGAAGTTGTCCTTGACAGGCTTGCTTCTCCTGATGTTGTTGACTTGATCCGAGGGAAGAAAGTTGACGTCAACTTGGTCCAAAGGTTGAAGAACACTCTTTATGCTGTTGAAGCTGTGCTGAATGATGCTGAACAGAAACAGTTCAACTTCAAAGACTCTGCTGTTAACAAATGGCTTGATGACCTCAAAGATGCTGTTTATGTTGCTGATGACATTTTGGATCACATCTCTACCAAAGCTGCTATTTCTAAGAACAACAAGGTGAGTACTGCTACTAACTACTTCTCTCGCTTTTTCAACTCTGAAGAGAGGGATATGATTTGCAAGTTGGAAAATATTGTTGCTAAGCTTGAATACATTATCAAATCCAAAGATATTCTTGGCCTTCAACATATTGCTACTGACCACCACTCTTCTTGGAGAACTCCATCCACCTCTCTAGTAGATGTTGGATCTGACATATTTGGTAGGGATCAAGACAAAGAGGCCATACTCAAACTACTGttagatgatgataatgatgatgccAAGATTTCTGTGATCCCCATAGTTGGTATGGGTGGAGTGGGAAAAACCACTTTGGCCCAATCTGTGTATAACCATGACAGTGTAAAGAAGAAGTTTGATGTTCAAGCATGGGCTTGTGTTTCTGACCATTTCGATGAATTCAACATTACAAAGGCAATCATGGAGGCTGTTACTAGAAGTCCTTGTTATATAAAGACCAAAGAGTTGCTTCATCTTGatttgaaggaaaaattgaCTGGAAAAAAGTTCTTAATTGTTTTGGATGATGTCTGGACCGACGATTATGACGGTTGGAATTCTCTTTTAAGGCCTCTTCAATACGGAACTATGGGAAGTAAAATTCTTGTAACAACCCGTATTGAAAAAGTTGCATCTATGGTCCAAACTTTTCAAACTTACCATCTTGAGCAATTGTCTAATGAAGATTGTTGGTCCGTGTTTGCAAACCATGCTTGTCTTTCTCCAAAAGAATCCACTGAGAATATGGATCTCCACAAAATTGGCAAAGAGATTGTTAGAAAATGTAAGGGATTGCCTTTAGCAGCACAATCACTTGGGGGCTTGTTGCGACGTAAACGTGACATCAAGGATTGGGATAATATACTAAATAGCAATATTTGGGAAAATGAGAGTAAGATCATTCCGGCACTAAGAATTAGTTATCATTATCTCCCTCCCTATTTGAAACGTTGCTTTGTTTATTGTTCATTGTATCCTACGGATTATGAATTTGAGAAAGACCATTTGATCTTGCTATGGATGGCCGAAGATCTTTTACAGCCTCCAAAAAATGGGAAGACTTTAGAAGAAGTTGGTTATGGGTATTTTGATGACTTAGCTTCAAGATCATTTTTTCAACGTTCCGAAAATGGGAGTTTTGTGATGCATGATCTGATGCACGATTTAGCAACATTGCTCGGTGGAGAGTTCTATTTAAGAAGAGAAGAACTTGCTAATGAAACGAATATCGGTACCACGGCTCGTCATTTGTCATTTAGTGAGTTCGGTGATCCAGTACATGAAAACTATGATGTTTTTGGCCGAGCAAAACATCTTAGGACGTTTTTGCCAATCAATTTTAGAAATCCTCCATTTAACAATGAAAAGGCACCATgcataattttgtcaaatttgaaGTGCTTGAGAGTTTTGTCATTTAGTAGTTTTCAGGATCTTGATTTATTGCCTGATTCGATAGGTGAACTGATCCATTTGCGATATTTGGATCTATCTTTCACAAATATAACGACATTACCAGAGTCATTTTGTAatctttataatctacaatcGCTTCCCAATGACATGCAAAATCTTGTAAATTTGCGCCATCTTGATATCAGTAACTGTAATATGTTAGAAGAGATGCCTAGAGAAATAAGCAAATTAACAAATTTGCAAAAATTGAGTCTCTTTCTTGTGGGGAAGCATGGAGAGAAAGGGATAAAGGAATTAGGAACACTTTCAAATCTTCACGGATCACTTTCCATTGCAAAGTTAGAGAATGTTATCAACAACTTCGAAACATCAGAAGCAAAGATAATGGATAAGAATTACCTTGAGGAATTATGGTTGTCATGGTCTGAAGATGCAAAGGACCATTTTACGAACTCGCAAAGTGAGATGGATATACTTTGCAAGTTACAGCCAACCAAGAACCTAAAAAGGCTAGAT 2244 0.369 MAMAAVGEAFLSAFIEVVLDRLASPDVVDLIRGKKVDVNLVQRLKNTLYAVEAVLNDAEQKQFNFKDSAVNKWLDDLKDAVYVADDILDHISTKAAISKNNKVSTATNYFSRFFNSEERDMICKLENIVAKLEYIIKSKDILGLQHIATDHHSSWRTPSTSLVDVGSDIFGRDQDKEAILKLLLDDDNDDAKISVIPIVGMGGVGKTTLAQSVYNHDSVKKKFDVQAWACVSDHFDEFNITKAIMEAVTRSPCYIKTKELLHLDLKEKLTGKKFLIVLDDVWTDDYDGWNSLLRPLQYGTMGSKILVTTRIEKVASMVQTFQTYHLEQLSNEDCWSVFANHACLSPKESTENMDLHKIGKEIVRKCKGLPLAAQSLGGLLRRKRDIKDWDNILNSNIWENESKIIPALRISYHYLPPYLKRCFVYCSLYPTDYEFEKDHLILLWMAEDLLQPPKNGKTLEEVGYGYFDDLASRSFFQRSENGSFVMHDLMHDLATLLGGEFYLRREELANETNIGTTARHLSFSEFGDPVHENYDVFGRAKHLRTFLPINFRNPPFNNEKAPCIILSNLKCLRVLSFSSFQDLDLLPDSIGELIHLRYLDLSFTNITTLPESFCNLYNLQSLPNDMQNLVNLRHLDISNCNMLEEMPREISKLTNLQKLSLFLVGKHGEKGIKELGTLSNLHGSLSIAKLENVINNFETSEAKIMDKNYLEELWLSWSEDAKDHFTNSQSEMDILCKLQPTKNLKRLD 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04010 748 Pfam NB-ARC domain 173 394 IPR002182 GO:0043531
Tsu08g04010 748 PANTHER DISEASE RESISTANCE PROTEIN RP 34 747 IPR044974 GO:0006952
Tsu08g04010 748 Coils Coil 41 61 - -
Tsu08g04010 748 PRINTS Disease resistance protein signature 366 380 - -
Tsu08g04010 748 PRINTS Disease resistance protein signature 268 282 - -
Tsu08g04010 748 PRINTS Disease resistance protein signature 627 643 - -
Tsu08g04010 748 PRINTS Disease resistance protein signature 195 210 - -
Tsu08g04010 748 Gene3D - 328 410 IPR042197 -
Tsu08g04010 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 426 IPR027417 -
Tsu08g04010 748 SUPERFAMILY L domain-like 485 717 - -
Tsu08g04010 748 Gene3D - 15 130 - -
Tsu08g04010 748 Pfam Rx N-terminal domain 10 102 IPR041118 -
Tsu08g04010 748 Gene3D - 156 324 IPR027417 -
Tsu08g04010 748 PANTHER OS05G0414200 PROTEIN 34 747 - -
Tsu08g04010 748 Gene3D - 411 495 IPR036388 -
Tsu08g04010 748 Gene3D Ribonuclease Inhibitor 535 748 IPR032675 -
Tsu08g04010 748 SMART LRR_typ_2 593 616 IPR003591 -
Tsu08g04010 748 SMART LRR_typ_2 629 653 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04010 Tsu-Chr8 58347058 58367441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04010 168 329 WRKY Transcription Factor Family AT4G12020 27.168 4.80e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04010 - - mtr:MTR_2g014730 1080.47