Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04003 AtgctttcaatttttcatttcttaattTCGCAAATTCCTCATATTTGTATGCATCTAATTGTCTCTGCTAGGTTTTCACTCGacattctctcttctctcaagTTTGCTCACCGAATTCGTCCAGGCGTTCACGTCATGGCTAATCAGCCTGTTGCTCAGAACAATGTCCCAAATGCTGCTGTTGCTCAGGTTGGATTTTTTGACGACAGAGCTGCTTGTTGGTTTTATTTGACTGGAGGACCGTGTCCGTATGAGCCGCATTGTAGATTTCGGCACGATCTTTGTCATACTCTGTTAGAGACTGGGCACAACTGCGATGATGTTGCTTTATGCAGGCGTGCTCATTTTAGGTTGGAGCTGTGCCGTTTTTGGGCGACCGGGAGGAGGTGTCCTCATCAGGGTGATTGCTCATACTCACATGGTTATGATGATGACCGCGGTGTCCCCCATGTCTATAGGGTGTCTTTGTGCACACGTTTCTTTTCTAGCAGCGGATGCAGGTTTGGATCTCGATGCTGGTTTCGTCATATCCGCACAGAGGCTGAGGCTGAGATGGATGTTGATTAG 567 0.4444 MLSIFHFLISQIPHICMHLIVSARFSLDILSSLKFAHRIRPGVHVMANQPVAQNNVPNAAVAQVGFFDDRAACWFYLTGGPCPYEPHCRFRHDLCHTLLETGHNCDDVALCRRAHFRLELCRFWATGRRCPHQGDCSYSHGYDDDRGVPHVYRVSLCTRFFSSSGCRFGSRCWFRHIRTEAEAEMDVD 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04003 188 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Tsu08g04003 188 PANTHER CCCH ZINC FINGER/TIS11-RELATED 115 185 IPR045877 GO:0003729
Tsu08g04003 188 SUPERFAMILY CCCH zinc finger 113 146 IPR036855 GO:0046872
Tsu08g04003 188 SUPERFAMILY CCCH zinc finger 150 180 IPR036855 GO:0046872
Tsu08g04003 188 Gene3D - 116 186 - -
Tsu08g04003 188 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Tsu08g04003 188 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
Tsu08g04003 188 SMART c3hfinal6 115 142 IPR000571 GO:0046872
Tsu08g04003 188 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Tsu08g04003 188 SMART c3hfinal6 68 94 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04003 117 183 C3H Transcription Factor Family AT1G68200 32.857 2.37e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g04003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04003 - K15687 egt:105969943 49.6766