Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04000 ATGGAACAACATCATAAAGTGTTTCCTCTACTGGTGCTGCTTCTTTTCCATGTTGTGATTGTTGCATCACAGACAGATAGTGGAGATTTTACTGCTTTTTCATCTTTGGTACAATCATGGAAAAACAAACCATTAAATTGGGTTGGTTCTGATCCTTGTGGAAGTGTTTGGGACGGAATTCGTTGCACCAATTCAAGAATTACTGAATTgAGACTAGCTGGCTTGAGTTTGGAGGGTCAGCTATCTTCAGCAATCCAGTCCTTATCTGAACTTGTTACGCTGGATCTTTCATACAACACGGGCATGACAGGAACAATTCCACGAGAAATTGGGAATTTGAAAAACCTCGATTCCTTGGCATTGGTTAATTGCGGTTTCTCTGGCCCTATTCCGGATACAATAGGATCTTTGAAGAAGCTGACATTTTTGGCTTTGAATTCGAACAAGTTCAATGGAAATATTCCGCACTCTCTTGGAAATCTAGCCAAGCTTGATTGGTTAGATCTTGATGATAACCAACTGGAAGGGCCTATTCCTGTCTCAGATGGTCAAGGACAATCGGGTTTGGACATGCTCGTTGGGACGCAGCACTTTCATTTGGGGAACAATAAACTTTCAGGTCCAATACCATCACAACTTTTTAACTCCAGCATGCATCTAAAACATGTGCTTTTCGACCACAATCAACTAAACGGAAGTATTCCTAGCACCCTTAGCAGCCTTGTGAGCACAGTGGAAGTGGTGCGCTTTGACAACAATCAATTAAGCGGTACAGTACCTTCCAGCTTGAACAATCTCGAAAAACTTAGCGAGCTCTATTTATCTCACAATGAACTGACTGGCTCTCTACCGGATCTTACCGGAATGAGTAAGCTCACCTACGTGGATCTGAGTGACAATACCTTCAATTCATCTACTATTCCTTCATGGGTTACTACTCCTAGTCTGCCAAATCTGTTAACAGTAATACTGAAGGACAACAAGCTCGGTGGCACATTTAATATCAGCAGTGGCTACAGAAGTAATCTGCAACTCATTGATTTGCAGAAAAATGATATTACCGACTTCGTGTATGGAAACCAAAAATGGAATTTTGACTTGAGACTGGCTCAAAAcagattttgttttgaaaatggaGTTTCTAATGAGAGTTACTGCAAAGTTCCCCAAGCCATTCCCTCATATTCAACACTGCCAAATGGTTGCTCGCCTCCTTCATGCAGTAACAATCAGATTGCCAGCCCCAACTGTAAATGTGCATTTCCCTATATTGGAAATCTATCATCCAGAGCTTTTAGTGTCTCAAACTATAGTGATACAAGTTACTACAAGGAAATTGAGAAAACTTTGTTGGATACTTTCCGAAAACAAAATATTCCGGTGGATTCAGTTTCTCTTAGTAATCCTATCCAGGTTTCATCTAATGATAATTTTCAGTTGACTCTTAGTCTCTTCCCATCTCAAACCGACCGTTTCAATACAACTGGAGTTTCAACTGCTGCTTTTATTCTTAGCAACCAAATTTACACGCCTCCAGATTATTTCACCCCTTACTTCTTCATTGGCAGTAACTATCAATATTATGGAGGAGAACCTAAAGGATCAAAGTCATCAAATACTGGGGCTATAGTTGGTGCAGTAGTTGCTGTATTGGTATTTATTGTACTGGCAATACTCATAGGGTTATACGTCATGAGCAAGAAAAGAAGATCAGGATCTTCCGAGTCAAACCCTTTTGTAAACTGGGAACAAAACAAGAATAGTGGAGCTGCTCCTCAGCTGAAAGGAGCACGATGGTTTTCTTTTGATGACATGAGGAAATACACCAACAATTTCGCAGAAGCAAACACTATTGGATCAGGAGGCTATGGACAgGTTTACCAAGGTACTCTTCCCACTGGGGAATTGGTTGCAATCAAAAGGGCTGGAAAAGAATCTATGCAGGGAGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTTAGTCTTGTGGGTTTCTGTTACGAGAAAGGTGAACAGATGTTGGTCTATGAGTACGTTCCAAACGGCACTTTATTGGATAGTCTTTCAGGAAAATCTGGCATATGGATGGATTGGATAAGGAGGCTCAAAGTTACATTGGGTGCCGCCAGGGGTCTTACCTATCTACATGAACTCGCTGACCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATAATCACCTCGTCGCAAAAGTTGCTGATTTTGGTCTCTCGAAACTTCTTACTGATAGCGATAGGGGCCATGTTACTACTCAAGTCAAAGGAACAATGGGATACTTGGATCCGGAATATTACATGACCCAGCAATTGACAGAAAAGAGTGATGTATATAGCTTTGGAGTGCTAATGTTGGAACTAGCAACATCAAGAAAGCCTATAGAGCAAGGAAAATATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGAGTTATACAACCTTCATTCAATTATTGATCAAAGTCTACTCAAAGCGGCGAGACCAATAGGTTTAGAAAGGTATGTGGAGCTGGCATTGAGGTGTGTCAAAGAATACGCAGCTGAGAGACCTTCAATGGCCGAGGTTGCAAAAGAGATCGAAAGCATAATCGAGCTTGTTGGAGTGAATCCGGATTCGGAATCAGCTCCAACAACAGAAACTTATGTGGATGCAGGTGCCGGGGATGGTAAACATCCTTATGTGAATGATGATGAGTTTGAATATAGTGGAATGTTTCCAACAACAAGGGTAGATCCTCAATGA 2808 0.4067 MEQHHKVFPLLVLLLFHVVIVASQTDSGDFTAFSSLVQSWKNKPLNWVGSDPCGSVWDGIRCTNSRITELRLAGLSLEGQLSSAIQSLSELVTLDLSYNTGMTGTIPREIGNLKNLDSLALVNCGFSGPIPDTIGSLKKLTFLALNSNKFNGNIPHSLGNLAKLDWLDLDDNQLEGPIPVSDGQGQSGLDMLVGTQHFHLGNNKLSGPIPSQLFNSSMHLKHVLFDHNQLNGSIPSTLSSLVSTVEVVRFDNNQLSGTVPSSLNNLEKLSELYLSHNELTGSLPDLTGMSKLTYVDLSDNTFNSSTIPSWVTTPSLPNLLTVILKDNKLGGTFNISSGYRSNLQLIDLQKNDITDFVYGNQKWNFDLRLAQNRFCFENGVSNESYCKVPQAIPSYSTLPNGCSPPSCSNNQIASPNCKCAFPYIGNLSSRAFSVSNYSDTSYYKEIEKTLLDTFRKQNIPVDSVSLSNPIQVSSNDNFQLTLSLFPSQTDRFNTTGVSTAAFILSNQIYTPPDYFTPYFFIGSNYQYYGGEPKGSKSSNTGAIVGAVVAVLVFIVLAILIGLYVMSKKRRSGSSESNPFVNWEQNKNSGAAPQLKGARWFSFDDMRKYTNNFAEANTIGSGGYGQVYQGTLPTGELVAIKRAGKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCYEKGEQMLVYEYVPNGTLLDSLSGKSGIWMDWIRRLKVTLGAARGLTYLHELADPPIIHRDIKSSNILLDNHLVAKVADFGLSKLLTDSDRGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELATSRKPIEQGKYIVREVMRVMDTSKELYNLHSIIDQSLLKAARPIGLERYVELALRCVKEYAAERPSMAEVAKEIESIIELVGVNPDSESAPTTETYVDAGAGDGKHPYVNDDEFEYSGMFPTTRVDPQ 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04000 935 CDD STKc_IRAK 618 884 - -
Tsu08g04000 935 ProSiteProfiles Leucine-rich repeat profile. 268 290 IPR001611 GO:0005515
Tsu08g04000 935 SUPERFAMILY Protein kinase-like (PK-like) 598 894 IPR011009 -
Tsu08g04000 935 ProSitePatterns Protein kinases ATP-binding region signature. 618 644 IPR017441 GO:0005524
Tsu08g04000 935 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Tsu08g04000 935 Gene3D Ribonuclease Inhibitor 187 394 IPR032675 -
Tsu08g04000 935 Pfam Protein kinase domain 614 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04000 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Tsu08g04000 935 SMART serkin_6 612 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04000 935 Gene3D Transferase(Phosphotransferase) domain 1 688 896 - -
Tsu08g04000 935 SUPERFAMILY L domain-like 50 361 - -
Tsu08g04000 935 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 2 917 - -
Tsu08g04000 935 PANTHER RECEPTOR-LIKE PROTEIN 55 2 917 - -
Tsu08g04000 935 Gene3D Phosphorylase Kinase; domain 1 582 687 - -
Tsu08g04000 935 ProSiteProfiles Protein kinase domain profile. 612 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04000 Tsu-Chr8 58262182 58268320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04000 10 935 Receptor kinase-like Gene Family AT5G49760 50.789 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Tsu08g04000 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04000 - - mtr:MTR_2g014960 1552.73