Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03997 atggcTTCATCTAACAGACACTGGCCAAGTATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCTTCTTCTGCTTGTCACAGAACTCCTTACTCAGGTGAAGAAAGAAGTGCTGAGCCGAAACCAAGGTGGAATCCGAAACCGGAACAAATTCGGATACTTGAAGCTATCTTCAACTCTGGCATGGTGAATCCACCAAGAGAAGAAATAAGGAAAATCAGAGCACAGTTACAAGAATATGGACAAGTTGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGGAAATCTAGAAGCAAACATAAGCTTCGCCATCTTCAAAACCAGAACTCCAAGAACCAGAATCAGAACTTGCAGAATCAAGAACATCATCTACCACAACAAAACTCTGTTTCATCACTTTCACAAATCACTACTGcaccttcatcttcatcatcttcttctgaGAAATCTCCACCAAAAGAATTAATACCTTCTAAGGTATTTTCTCTTGGTTTCACTAATATCAATGATATTGTGCCAAATTCTCCAACTGGTTCTGTGAATCAGAACTATTTTCATCCTCAAAATGAAACCAATCTTCTTCCAACACCACAAGTAACTGCTACACCTACTGAAACTTTCTTCTTCCCAATGCAAAATCATGCACTACCAGTACCTGCTACTAATAATGTTACATCACAATCACAAGGGTTTTGTTTCTCTGAACTTTCTAATATGGTTCATCAACCACAACAAAACAACACTTCTCATTGCACTGCTGGTATTCTTCTTAGTGAGATCATGAACAACCATGGTGCTACTAATTCTTCAAAGAAAGAACAAGTTCATGACAAGAATGTTAAGATAATGCACCAATCTCCACATTTTAACTTCTGTTTTGCACCCTCAACTACTACTGTTGCACCTCCCACCACTTCCTCCACCATCACTGTTCCATCCCCTATCACTTCTCAAGTTCAAGGCATTGGAGAAACTGGTGTTGCTGCAAGATCAATGGTGTTTATCAACGATGTGGCATTTGAGGTTGCATCTGGACCATTCAATGTTCGTCAAGCATTTGGTGATGATGCTGTTCTCATCCATTCAACTGGTCAACCTGTTTTAACTAACCAATGGGGTGTCACTCTCAATTCACTCCAACATGGTGCATGTTATTATCTTGTCATAtag 1206 0.3831 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSACHRTPYSGEERSAEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNSKNQNQNLQNQEHHLPQQNSVSSLSQITTAPSSSSSSSEKSPPKELIPSKVFSLGFTNINDIVPNSPTGSVNQNYFHPQNETNLLPTPQVTATPTETFFFPMQNHALPVPATNNVTSQSQGFCFSELSNMVHQPQQNNTSHCTAGILLSEIMNNHGATNSSKKEQVHDKNVKIMHQSPHFNFCFAPSTTTVAPPTTSSTITVPSPITSQVQGIGETGVAARSMVFINDVAFEVASGPFNVRQAFGDDAVLIHSTGQPVLTNQWGVTLNSLQHGACYYLVI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03997 401 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 400 IPR044557 GO:0003700|GO:0050793
Tsu08g03997 401 CDD homeodomain 51 113 IPR001356 GO:0003677
Tsu08g03997 401 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
Tsu08g03997 401 MobiDBLite consensus disorder prediction 135 164 - -
Tsu08g03997 401 MobiDBLite consensus disorder prediction 36 58 - -
Tsu08g03997 401 SMART HOX_1 50 117 IPR001356 GO:0003677
Tsu08g03997 401 MobiDBLite consensus disorder prediction 43 58 - -
Tsu08g03997 401 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Tsu08g03997 401 Gene3D - 43 112 - -
Tsu08g03997 401 MobiDBLite consensus disorder prediction 135 167 - -
Tsu08g03997 401 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03997 Tsu-Chr8 58237008 58239547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03997 1 119 Wox Gene Family AT2G33880 81.148 4.87e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu08g03997 Homeodomain 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03997 - - mtr:MTR_2g015000 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03997 08 58237008 58239547 Tsu08g03997 08 58237008 58239547 ECH