Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03995 ATGGTTTCATTTTCACAGTCCCAACCAGAACTACCCTTAAATGAAAATGATTCACAAGACATGGTCATATACCAAGTCCTAAACGAAGCCAACAATCTAACCAACACATTTGTTCAACAGAGgaaccaccatcatcatcatcatcaccatcaagcTTTGAGTGGTTTAGAACCTACAAAGGCTATCACCAAGAAGCATTATAGAGGCGTAAGGCGTCGTCCGTGGGGGAAATATGCCGCGGAGATTCGTGACTCGGCTCGTCATGGAGCTAGAGTATGGCTTGGAACTTTTCAAACAGCTGAAGAAGCTGCTATGGCTTATGATAGAGCTGCTTTTAAAATGAGAGGTTCTAAAGCTTTGCTTAATTTTCCAGCTGAAATTGTTGCTGCAGCTTCCAAGCAAATGGAATTTTTCAATTCAAAGCTTAATCATGATTCTGAATCAAGTGGTAGTAGTTGTTGTACCAATTCTAATTCCAATAGAACTACTCAGTTTGAAAGCACAGGGGAGCAAGTAAAGAAAGAAGATTAA 531 0.3748 MVSFSQSQPELPLNENDSQDMVIYQVLNEANNLTNTFVQQRNHHHHHHHHQALSGLEPTKAITKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEIVAAASKQMEFFNSKLNHDSESSGSSCCTNSNSNRTTQFESTGEQVKKED 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03995 176 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Tsu08g03995 176 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Tsu08g03995 176 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Tsu08g03995 176 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Tsu08g03995 176 MobiDBLite consensus disorder prediction 143 167 - -
Tsu08g03995 176 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 6 142 - -
Tsu08g03995 176 MobiDBLite consensus disorder prediction 143 176 - -
Tsu08g03995 176 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
Tsu08g03995 176 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Tsu08g03995 176 PANTHER DNA-BINDING DOMAIN 6 142 IPR044808 GO:0003700|GO:0009873
Tsu08g03995 176 SUPERFAMILY DNA-binding domain 66 126 IPR016177 GO:0003677
Tsu08g03995 176 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03995 Tsu-Chr8 58217224 58218158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03995 4 127 AP2-EREBP Transcription Factor Family AT5G47220 50.725 2.87e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g03995 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03995 K13433 - gmx:100811533 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03995 08 58217224 58218158 Tsu08g03995 08 58217224 58218158 ECH