Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03994 ATGGAGAATATTCACATTCATAATAGTAATAATCATGATGCAACTTGTGAAGGGTCAATTCTTGAGAATGTATGGGctaaaattataagcaaaaatgatgGAAGAATTGGTACAAATGAAAATGAAGCAGAATGTTCTAACACATGGGAAGATTTGCCTACTCTCGACGAAAGAGACGGTTCGATGGAAATTCTTCAAAGATTGCCAAGTTTAGGAAGATGGATATCAATGGGAGCTGAGTTTTGGGAACAAGTTTTAGATAGTACTATTCTACCTACTACTAGTACTTCAATAAGCAATATAGAAGATTATAGCAACAAAAATAATGAGATTGAAAGTGTTgataaatcaaagaaaaaagtgGAAGGTGGtgtgaaaaaagagaaaaaaacagGTGAAAAACATTATAGAGGAGTAAGGAGAAGACCATGGGGAAAATATGCAGCTGAGATTAGAGATTCGTCGAAGAAAGGCGCAAGAGTTTGGCTTGGTACATTTGATACTGGTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTTCAAAAGCATGTCTAAATTTTCCAATTGAGAAAGTTataaatgcaaatgcaaatactTTAGGATGTGGTAAGAAAGGAATTGATGATGTTCCAAAGAGAGAAAGTTTATTGGATTCTAAGAAGAGAGGATTAAGGGATAGAGGAGAATTTGTTGATGTGATGAATATTGAAGAACCTGCAACAAAAAAGATGGCAGGGTTGGAAGATATGTTAGAAAATGATGTTTTTGTATTtcaggatttagggattgattACTTGGACAGTTTATTGTCTTCTTTTTGA 837 0.307 MENIHIHNSNNHDATCEGSILENVWAKIISKNDGRIGTNENEAECSNTWEDLPTLDERDGSMEILQRLPSLGRWISMGAEFWEQVLDSTILPTTSTSISNIEDYSNKNNEIESVDKSKKKVEGGVKKEKKTGEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTGEEAALAYDKAALRIRGSKACLNFPIEKVINANANTLGCGKKGIDDVPKRESLLDSKKRGLRDRGEFVDVMNIEEPATKKMAGLEDMLENDVFVFQDLGIDYLDSLLSSF 278
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03994 278 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Tsu08g03994 278 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Tsu08g03994 278 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Tsu08g03994 278 SUPERFAMILY DNA-binding domain 135 194 IPR016177 GO:0003677
Tsu08g03994 278 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Tsu08g03994 278 MobiDBLite consensus disorder prediction 115 132 - -
Tsu08g03994 278 Gene3D AP2/ERF domain 134 195 IPR036955 GO:0003700|GO:0006355
Tsu08g03994 278 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Tsu08g03994 278 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 278 - -
Tsu08g03994 278 MobiDBLite consensus disorder prediction 115 136 - -
Tsu08g03994 278 CDD AP2 134 194 IPR001471 GO:0003700|GO:0006355
Tsu08g03994 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 22 278 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu08g03994 Tsu-Chr8 58214466 58215302 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03994 17 278 AP2-EREBP Transcription Factor Family AT4G18450 37.025 3.69e-41 142
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g03994 AP2 4.3e-16 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03994 - - gmx:112999553 289.656
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03994 08 58214466 58215302 Tsu08g03994 08 58214466 58215302 ECH