Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03992 ATGCATTACCTTTCAATTATTCCTCAAGTATTAACAAGAATTTGTATATTCTTTTTCTTGCTCATCCCTTTTGTTCTCATCCATGGCATTCGAGATGAGACGATGAATTCAGATAAAAAAGTTATATCCATTGGTGTGATCATTGATGGTGATTCTCGTATTGGGAAAGAACAAGAAGTAGCCATGGATATTGCAGCCAAGAGTTACAACAACACTTCAAAGAATCACAAGTTGGCTCTCTATTTTCGGAACTCCACCGAGGATACCCTCAGGGCCATCGCACTTGCTGAAGAGATGATTAATGTGCAAAAGGTGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTATAGTGGCTGAAATAGGAAGCAAAGCTCAAGTTCCTATCATATCCTTTGCAGAACCTATCATAACGCCACCGTTGATGAAAGCTCGATGGCCTTTTCTAGTGAGACTAGCTAACAATGGTACAGCATATATAAATTGTATTGCAGAAATAGTGCAGGCTTATAGTTGGAAGAGAGTAGTAGTAATCTACGAAGATGACGGATATGGTGGAGATTATGGGATGCTATCCCTACTAGCTGAGGCCCTTCAGGATGTGGATTCAATAATAGAGCGCCGTTTAGCCCTTCCTCCAATTTCTTCTCTACATGATCCAGGAGAGCTAGTTAGTGAAGAGATGCTTaagttaaaacaaacacaatCTCGGGTTTTCATAGTGCTGCAATCATCATTAGAAATGGCAATTCATGTGTTCAAAGAAGCTTCAAAAGTTGGACTGGTGGATACAGAATCAGTTTGGATAATCCCGGAGAGCGTAACTAATTTGCTGGACACTGTCAATAAGTCTGCTATTTCCTATATGGAAGGAGCTTTAGGAATTAAAAACTACTACTCAGAAAGAAGCAAGGAGTATCAAGAATTTGAGGCTCAGTTCCGGAAAACATTTTCATTAAAGAATCCTGAAGAAGATAACCGATACCCCGGATTTTATGCTCTACAAGCATATGATAGCATTAACATTGTAACTCAAGCAACCAACAGAATGACCGGTATGAACAATAGCAGCTCAAAGACTTTACTAAAAGAAATACTGTCTAGCAATTTCCTTGGTTTAAGTGGTCATATTCAACTTGAAGCCGGAAAACTCATGCTGAATAATCGTGTCTTAAGAATTGTAAATGTGGCTGGGAGGAGTTACAAGGAATTATGCTCATGGACTCAACAACGCGGCTTCACTAAAATACTTCATGCCAGACAAAGTGAAAATAAGGTTGCTGGAAGTACAGAATGTTTCAAGGGTGTACGGTGGCCTGGGAATTTGGACCGCGATCCAAAGGGATGGAACATGCCTACCAAAAAAAATCCATTGAAAATTGCAGTCAGAAGTAGAACCTCCTTTTCCAGATTTGTCAAGGTTGAGTATGGCCAGAATCAAATGCCTTATAAATATAGTGGATTCTGCATTGAAATTTTTGAGCATGTACATAAACTTTTGGGATACGATCTGCCATATACTTATTATCCCATCAATGGAACCTATAACGATTTGGTTCAGTATGTCTATAACAAGACTTACGACGCAGCTGTTGGGGACATGACCATAATAGAGGAAAGATTGCAGTATGTAGATTTTACAGTACCATATGCAGAATCAGGATTGTCAATGGTAGTTCCAATGAAGACTGAAGAATCAGCATGGATGTTTATGAAGCCATTTACATGGGAATTGTGGCTGGTTACATGTGCAATCTTGATTTACACAATGTTAGTTGTTTGGTATCTCGAGCGAGAACCTAACCCCGAGTTTCATGGAAACTGGAAGCTCCAACTCAGCACAGCTCTTTGGTTTACCTTCTCCTCTCTATTCTTTGCTCATAGAGAAAAAATGCATAGCAACTTAACTCGATTGGTGATGGTCTCGTGGCTATTTCTTGTATTGATTCTCACCTCAAGCTACACAGCTAGTCTTTCTTCAATGCTCACAGTTAAACAGTTACGACCAAATGTCACGGACATTCAGTGGCTGAAGAACAATAACAAGAAAATTGGTTGTGACGGCGACTCATTTGTTAGGACGTTCTTAGAGAAAGTTGAAAAGTTCAAGCCAGAGAATATCATAAACGTTACCGATGAATACAAGTATGATGAAGCATTCTCTAATAACAGCATAACAGCTGCTTTTTTTGAGCTTCCATACGAAAAAGTATTCATCAGTGAATACTGCAAGAGATACACCGGCTTCACGCCTAGAAACAGATTTGGAGGATTCGGCTTTATGTTCCAGAAAGGCTCTCCTCTAACCAGAGACGTTTCGAAAGCTATATTAAATCTCTCAGAAAATGCAGAACTGAAGAGATTGGAAGAAAAATGGCTAATTAACTCACAAAATTGCTCCAACAACGTGACATCCTCCAACGATACGGATAGTTTGAATCTTGGAAGCTTATGGATTCTATATGTCATCTCTTGTGCCACTTCTACTATTTGTCTGCTAATATCAATCATCAAGCGTCTAAAGTCCAATTACCGACATGAAAACTTGCCACCAGAAGAAGGCAATGGCACACCAAGTGATGAAAAGGTGTGGAACAAGGTTCTTGAATTTGCAAAGCAGATTTATAGCAAAAAGCTCGATGATTCAGGTAAGGAACAGGATGTAATCGACTGTTCTTCGAGATCAAGTCATGTCAGCATCGCTGATATTCCCGAGCATTCACAAGAATTCGCTTCTCCGCCAAAAGAGGTACATATGACAAGTTCAAATGTACAACACATGACATAG 2793 0.3949 MHYLSIIPQVLTRICIFFFLLIPFVLIHGIRDETMNSDKKVISIGVIIDGDSRIGKEQEVAMDIAAKSYNNTSKNHKLALYFRNSTEDTLRAIALAEEMINVQKVQVIIGMHTWPEAAIVAEIGSKAQVPIISFAEPIITPPLMKARWPFLVRLANNGTAYINCIAEIVQAYSWKRVVVIYEDDGYGGDYGMLSLLAEALQDVDSIIERRLALPPISSLHDPGELVSEEMLKLKQTQSRVFIVLQSSLEMAIHVFKEASKVGLVDTESVWIIPESVTNLLDTVNKSAISYMEGALGIKNYYSERSKEYQEFEAQFRKTFSLKNPEEDNRYPGFYALQAYDSINIVTQATNRMTGMNNSSSKTLLKEILSSNFLGLSGHIQLEAGKLMLNNRVLRIVNVAGRSYKELCSWTQQRGFTKILHARQSENKVAGSTECFKGVRWPGNLDRDPKGWNMPTKKNPLKIAVRSRTSFSRFVKVEYGQNQMPYKYSGFCIEIFEHVHKLLGYDLPYTYYPINGTYNDLVQYVYNKTYDAAVGDMTIIEERLQYVDFTVPYAESGLSMVVPMKTEESAWMFMKPFTWELWLVTCAILIYTMLVVWYLEREPNPEFHGNWKLQLSTALWFTFSSLFFAHREKMHSNLTRLVMVSWLFLVLILTSSYTASLSSMLTVKQLRPNVTDIQWLKNNNKKIGCDGDSFVRTFLEKVEKFKPENIINVTDEYKYDEAFSNNSITAAFFELPYEKVFISEYCKRYTGFTPRNRFGGFGFMFQKGSPLTRDVSKAILNLSENAELKRLEEKWLINSQNCSNNVTSSNDTDSLNLGSLWILYVISCATSTICLLISIIKRLKSNYRHENLPPEEGNGTPSDEKVWNKVLEFAKQIYSKKLDDSGKEQDVIDCSSRSSHVSIADIPEHSQEFASPPKEVHMTSSNVQHMT 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03992 930 CDD GluR_Plant 458 795 - -
Tsu08g03992 930 Gene3D - 709 803 - -
Tsu08g03992 930 Gene3D - 569 708 - -
Tsu08g03992 930 PANTHER GLUTAMATE RECEPTOR 3.4 22 913 - -
Tsu08g03992 930 SMART GluR_14 459 797 IPR001320 GO:0015276|GO:0016020
Tsu08g03992 930 Pfam Ligand-gated ion channel 796 828 IPR001320 GO:0015276|GO:0016020
Tsu08g03992 930 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Tsu08g03992 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 913 - -
Tsu08g03992 930 SUPERFAMILY Periplasmic binding protein-like II 441 796 - -
Tsu08g03992 930 MobiDBLite consensus disorder prediction 916 930 - -
Tsu08g03992 930 Gene3D - 50 388 - -
Tsu08g03992 930 Pfam Receptor family ligand binding region 59 387 IPR001828 -
Tsu08g03992 930 PIRSF IGluLR_plant 9 929 IPR017103 -
Tsu08g03992 930 MobiDBLite consensus disorder prediction 906 930 - -
Tsu08g03992 930 SUPERFAMILY Periplasmic binding protein-like I 40 451 IPR028082 -
Tsu08g03992 930 Gene3D - 461 568 - -
Tsu08g03992 930 Pfam Bacterial extracellular solute-binding proteins, family 3 486 795 IPR001638 -
Tsu08g03992 930 Gene3D - 157 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03992 Tsu-Chr8 58190555 58193911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03992 17 850 Ion Channels AT2G29120 33.527 5.34e-148 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03992 - - mtr:MTR_2g015270 1523.84