Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03991 ATGCAACTTGCAGCTCAAAGTTTCAATAATTACTCCAACAATCAAAACGTAATCCTTTTCTTCCGCGACTCTGCTAGAAACTCTTTACAAGCAGCTTCAGCAGCTGAGGAATTAATTACTAAAGAGGAAGTTAAAGTGCTTATTGGTATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAGTTTCAAATACcaacaatttcattttcttctccTCCGTTGTTAGTCTCTTCATCATCAATGCAACTTCGTTGGCCTTTCCTGATTCAAATGGCACAAAATCATTCTGCACAAATGAACTATATAGCTGATACTGTCCATGCTTTAAACTCTCAGATGGTTATAGTTATATATGAAGACAACCCTTATGGTAGCGATTTTGGAATGTTAAGCCTCTTAACCGAGGCTCTCGAAAAGGCTAACTCGCAGATTGAGTATCAATTAGTTCTTCCaccattcaattttttatctgATCCAAAATGGTTTGTTCTTGACGAATTGTTGAAGTTGTTGCCGTTAAAATCTCGTGTTTTTATTGTACTTAAAGCATCGTTACCTATGGTGAATCATTTGTTTAGAGAAGCTAAGAAAATCGGATTATTGGAGAAAGATTCATCTTGGATAATCAATGAGGAAATTACAAGCATGTTAGACTACATAGATAAATCTGTCTTATCTTCTATGGAAGGTGTTTTGGGAATCAAAACCAACTATTCTACTAGGTCTAGTGCTTATACTCAATTgtatgaaaatttcaaaactgAGCATACCGAAAAAGTTGAGTCCATACCAGGATCAAAGGTTTTGCTAGCTTATGATAGCATTTCAATTGTCACAAAGgctttagaaaaaataaatactaattcAATTAGTTCAAAGATGTTATTGGAGGAAATGTTATCTTCAGATATCAATGGCTTAATTGGAGATATAAGATTCAAAGAAAGTCAACTATGCTACACTCCAATATTAAGAGTCATAAAAGTGGTTGTTAATGATAAGAAAGTAATGGAGTTTGACTTTTGGACACCAAAGTTGAAGTTTTCTGAATCTCTTAATGAGAAAACAAGTGATGGTACTACAGAAACTAAGACATGGAAAGTACCTACAGTTACAAACCCTTTAAAAGTTGCAATTCCTATGTATCCTATAGTCGATAAATTTTTGGAAGTCTCTCAAAATCATACTGCTACCGGTTTTTGTATTGATCTTTTCAATGAGATCCGAGAAATTTTGAGTGACCAGTATTCCGGTCTTCCCTATAGATTTTACACTTTCACTGAATCTTATGATGCTATTCTACCTAAAGTCATAGATGAGACCTATGATGCTATTGTAGGAGATATAACAATACTTGCCGAGCGATCAAGGAATGTATCATTCACTCAACCCTATACTGAGTCGGGCTTATCACTCATATTTCCTGCAGAAAATGAAGATTCAGCATGGTTGTTTATGAAACCATTTAGCTGGGGAATGTGGGTTGCAACTATTGGAATCCTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCACTTGAATCCTGAATCTGGTGGATCATTGGAAAACCAGATCAGCACCACTATGTGGTTTActttttcttctctattttttGCTCATAAGAAAATAAACAGCAACTCAGCCAAAGTAGTAATTGGAGTATGGTTATTTCTTGTGTTGGTTCTAACCTCAAGCTATACTGCAAATCTTTCATCATTGCTTACTATCCGAAAATTGAGGTCTGATAAAAACATTGAATGGCTTAAACAAAACAATCTACCAATTGGTTGTGCTAGCACCAGTGCTTTTCTAAAGAATTACTTGATCCAAGTATATAATATCCCTAGGCACCAAATTGTCGATGTTGAGGGTGAACGTGACTATATGGataaattcaagaacaaaaaaattgctGCTATCTTTGCTGAGAGCCCATATGTTAAGCTTTTCTTGAATAAACACTGCAAAGATTACACTGCAACTACAGCTGCCTATAAATTTGGAGGAATGGGATTTGTATTTCAAGAAGGGTCTCCAATAGCAAAGGACTTTTCTGTAGCAATTTTAACACTAGGAGAAAATGGAAAACTAAAAGATTTGGAAGATAAATGGTTAACACCTTCAAATGAATGCTCAAACAACTCAGCATCTCCACAAACTGAGAGCCTGACTCTTGACAAATTTTGGGGACTCTATGTCATATGTGCTGCCACTTCCACCATATGCCTATTACTAGCTTTATTGAAGAAGTACTTCCATAAACATAACAACTATGAAGAGGAAACTCAACCCCCTCAGAAAAATTGTTGTATGTGCCTTAAAATTTTACCAAGCAACTGTTTAAAAGTAAGGAATTGGGTTTGGCTACTGCAGCGAGGTGGACAGCAGTGGCCGCGAGGCGGGTTGGGAACTGAAATTTCAAGGCATTGCTCACTGCCTTGTCCGCGAGGCGGATGTCAGAGTGTAAATTTGGGGCCCAAGGCGTCTAGTGGAAGTGCAGGGCAGATGCATCCTGTGCCATAG 2541 0.3573 MQLAAQSFNNYSNNQNVILFFRDSARNSLQAASAAEELITKEEVKVLIGMETWQEAALVADLGAKFQIPTISFSSPPLLVSSSSMQLRWPFLIQMAQNHSAQMNYIADTVHALNSQMVIVIYEDNPYGSDFGMLSLLTEALEKANSQIEYQLVLPPFNFLSDPKWFVLDELLKLLPLKSRVFIVLKASLPMVNHLFREAKKIGLLEKDSSWIINEEITSMLDYIDKSVLSSMEGVLGIKTNYSTRSSAYTQLYENFKTEHTEKVESIPGSKVLLAYDSISIVTKALEKINTNSISSKMLLEEMLSSDINGLIGDIRFKESQLCYTPILRVIKVVVNDKKVMEFDFWTPKLKFSESLNEKTSDGTTETKTWKVPTVTNPLKVAIPMYPIVDKFLEVSQNHTATGFCIDLFNEIREILSDQYSGLPYRFYTFTESYDAILPKVIDETYDAIVGDITILAERSRNVSFTQPYTESGLSLIFPAENEDSAWLFMKPFSWGMWVATIGILIYTMIIIWFLEHHLNPESGGSLENQISTTMWFTFSSLFFAHKKINSNSAKVVIGVWLFLVLVLTSSYTANLSSLLTIRKLRSDKNIEWLKQNNLPIGCASTSAFLKNYLIQVYNIPRHQIVDVEGERDYMDKFKNKKIAAIFAESPYVKLFLNKHCKDYTATTAAYKFGGMGFVFQEGSPIAKDFSVAILTLGENGKLKDLEDKWLTPSNECSNNSASPQTESLTLDKFWGLYVICAATSTICLLLALLKKYFHKHNNYEEETQPPQKNCCMCLKILPSNCLKVRNWVWLLQRGGQQWPRGGLGTEISRHCSLPCPRGGCQSVNLGPKASSGSAGQMHPVP 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03991 846 Gene3D - 487 622 - -
Tsu08g03991 846 PANTHER GLUTAMATE RECEPTOR 1 781 - -
Tsu08g03991 846 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 781 - -
Tsu08g03991 846 Gene3D - 2 325 - -
Tsu08g03991 846 Pfam Ligand-gated ion channel 713 743 IPR001320 GO:0015276|GO:0016020
Tsu08g03991 846 SMART GluR_14 380 713 IPR001320 GO:0015276|GO:0016020
Tsu08g03991 846 Gene3D - 627 719 - -
Tsu08g03991 846 SUPERFAMILY Periplasmic binding protein-like I 1 337 IPR028082 -
Tsu08g03991 846 Gene3D - 98 348 - -
Tsu08g03991 846 SUPERFAMILY Periplasmic binding protein-like II 369 712 - -
Tsu08g03991 846 Pfam Receptor family ligand binding region 1 321 IPR001828 -
Tsu08g03991 846 Gene3D - 374 486 - -
Tsu08g03991 846 Pfam Bacterial extracellular solute-binding proteins, family 3 397 712 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03991 Tsu-Chr8 58185430 58188714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03991 22 766 Ion Channels AT2G29120 31.000 2.56e-108 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03991 - - mtr:MTR_2g015290 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03991 08 58185430 58188714 Tsu08g03991 08 58185430 58188714 ECH