Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03990 atgcATTACCTTTCAAATATTTTGCTTCGGCTTCCTCTAATAATCTCACTTTTTCTTTTCCAATGTCTTGCCAATAATTCTCAAACTACAAGTGTTGGTGTTATCATTGATGTTAATTCTGAAATAGGGAAACAACAGAAAAAAGCCATGCAACTTGCAGCTCAAAGTTTCAATAATTACTCCAACAATCAAAACGTAATCCTTTTCTTCCGCGACTCTGCTAGAAACTCTTTACAAGCAGCTTCAGCAGCGGAGGAATTAATTACTAAAGAGGAAGTTAAAGTGATTATTGGAATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAGTTTCAAATACcaacaatttcattttcttctccTCCATTGTTAGTCTCTTCATCATCAATGCAACTTCGTTGGCCTTTCCTGATTCAAATGGCACAAAATCATTCTGCACAAATGAACTATATAGCTGACACTGTCCATGCTTTAAATTCTCAGAAGGTTATAGCTATATATGAAGACAACCCTTATAGTAGCGATTTTGGAATGTTAAGCCTCTTATCTGAGGCTCTCGAAAAGGCTAACTCGCAGATTGAGTATCAATTAGTTCTTCCaccattcaattttttatctgATCCAAAATGGTTTGTTCTTGACGAATTGTTGAAGTTGTTGCCGTTAAAATCTCGTGTTTTTATTGTACTTCAAGCATCGTTACCTATGGTGAATCATTTGTTTAGAGAAGCTAAGAAAATCGGATTATTGGAGAAAGATTCATCTTGGATAATCAATGAGGAAATTACAAGCATGTTAGACTACATAGATAAATCTGTCTTATCTTCTATGGAAGGTGTTTTGGGAATCAAAACCAACTATTCTACTAGGTCTAGTGCTTATACTCAAttgtataaaaatttaaaaactgaGCATACCGAAAAAGTTGAGTCCAAACCAGGATCAAAGGTTTTGCTAGCTTATGATAGCATTTCAATTGTCACAAAGGCTTTAGAGAAAATGAATACTAATTCAATTAGTTCAAAGATGTTATTGGAGGAAATGGTATCTTCCAATTTCAATGGCTTAATTGGTGATATAAGCTTCAAAGAAAGACAACTATCCTACAGTCCAATATTAAGAGTCATAAAAGTGGTTGTTAATGATAAGAAACTTATGGAATTGGACTTTTGGACACCAAAGTTGAAGTTTGCTGCAAGTGATGGTACTACAGAAACTAAAACATGGAAAGTACCTACTCATACAAACCCTTTAAAAGTTGCAATTCCTATGTATCCTTCAGGGGATAAATTTTTGAAAGTCTCTCAAAATCGTTCTGCTACCGGTTTTTGTATTGATCTTTTCAATGATATCCGAGAAATTTTGAGTGACAAGTATTCTGGTCTTCCCTATAGATTTTACACTTTCAATGTATCTTATGATACTATTATACCTAAAGTCGTAGATGAGACTTATGATGCTATTGTAGGAGATATAACAATACTTGCCGAGCGATCAAGGAATGTATCATACACTCAACCATATACTGAGTCGGGCTTATCACTCATATTTCCTGCAGAAAATGAAGATTCAGCATGGTTGTTTGTGAAACCATTTAGCTGGGGAATGTGGGCTGCAACTATTGGAATCCTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCATTTGAATCATGAATCGCGCGGATCATGGAAAAACCAGATCAGCACCACTATGTGGTTTActttttcttctctatttttttctcatagTAAGTCTTGA 1779 0.3378 MHYLSNILLRLPLIISLFLFQCLANNSQTTSVGVIIDVNSEIGKQQKKAMQLAAQSFNNYSNNQNVILFFRDSARNSLQAASAAEELITKEEVKVIIGMETWQEAALVADLGAKFQIPTISFSSPPLLVSSSSMQLRWPFLIQMAQNHSAQMNYIADTVHALNSQKVIAIYEDNPYSSDFGMLSLLSEALEKANSQIEYQLVLPPFNFLSDPKWFVLDELLKLLPLKSRVFIVLQASLPMVNHLFREAKKIGLLEKDSSWIINEEITSMLDYIDKSVLSSMEGVLGIKTNYSTRSSAYTQLYKNLKTEHTEKVESKPGSKVLLAYDSISIVTKALEKMNTNSISSKMLLEEMVSSNFNGLIGDISFKERQLSYSPILRVIKVVVNDKKLMELDFWTPKLKFAASDGTTETKTWKVPTHTNPLKVAIPMYPSGDKFLKVSQNRSATGFCIDLFNDIREILSDKYSGLPYRFYTFNVSYDTIIPKVVDETYDAIVGDITILAERSRNVSYTQPYTESGLSLIFPAENEDSAWLFVKPFSWGMWAATIGILIYTMIIIWFLEHHLNHESRGSWKNQISTTMWFTFSSLFFSHSKS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03990 592 Gene3D - 40 373 - -
Tsu08g03990 592 Pfam Bacterial extracellular solute-binding proteins, family 3 441 525 IPR001638 -
Tsu08g03990 592 Gene3D - 416 528 - -
Tsu08g03990 592 Gene3D - 147 294 - -
Tsu08g03990 592 SUPERFAMILY Periplasmic binding protein-like I 30 386 IPR028082 -
Tsu08g03990 592 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 590 - -
Tsu08g03990 592 Pfam Receptor family ligand binding region 46 379 IPR001828 -
Tsu08g03990 592 SUPERFAMILY Periplasmic binding protein-like II 405 560 - -
Tsu08g03990 592 PANTHER GLUTAMATE RECEPTOR 12 590 - -
Tsu08g03990 592 Gene3D - 529 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03990 Tsu-Chr8 58180085 58183930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03990 22 591 Ion Channels AT2G29120 29.794 1.70e-79 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03990 - - mtr:MTR_2g015290 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03990 08 58180085 58183930 Tsu08g03990 08 58180085 58183930 ECH