Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03989 atgaatttttatgctCAAAGTTTGAACTCAGTTCCAAATATTTTGCTTTGGCTTCCTCTAATAATCTCACTTTTACTTTTCCAATGTGTGGCCAATAGTTCTCAAACTACAAGTGTTGGTGTTATCATTGATGTTAATTCTGAAACAGGGAAACAACAGAGAATAGCCATGCAAGTTGCAGCTCAAAGTTTCAACAATAATTCCAACAATCAAAACATAATACTTTTCTTCCGTGACTCTTCTAGAAACCCTTTACAAGCAGCTTCAGCAGCTGAAGAATTAATTACTAAAGAGAAAGTTAAAGTGATTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGAAAAGTTTCAAGTACcaacaatttcattttcttctccTTTATTAGTCCCTTCATCATCAATGCAACTTCGTTGGTCTTTCTTGATTCAAATGGCACAAAATCATTCTGCACACATGAACTTCATAGCTGATATGGTCCATGCTTTCAACTCTAAAAAAGTTATAGCTATATATGAAGACAACCCTTATAGTAGTGATTCTGGAATGTTAAGCCTCTTGTCTGAGGCTCTCGAAAAGGTTAACTCGCAGATTGAGTACCGATTAGTTCTTCCACCATTCACTTCTTTGTCTGATCCAAAAGGTTTTGTTCTTGATGAATTGTTGAAGTTGTTGCCGTTAAAATCTCGTGTTTTTATCGTACTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGAATAAATATTCATCTTGGATAATCAATGAGGAGATTACAAGCAAGTTGGACTATGTAGATAAATCTGTTTTATCTTCTATGGAAGGTGTTTTGGGAATCAAAACCAGTTATTCTACTAGCTCTAGTGCTTATACTCAATTGTCTGAAACTTTGCAAGCTGAGCATACAGAAAAAGTTGAGTCCAAACCAGGATCAAAGGTTTTGCTAGCTTATGATAGCATTTCAATTGTCACAAAGGCTTTGGAGAAAATGAATACTGATTCTAGTAGCTCAAAGATGTTATTGGAGGAAATGTTATCTTCCAATTTCAATGGCTTAATTGGAGATATAAGATTGAAAGAAAGACAACTATCCTACACTCCAATATTAAGAGTCATTAAAGTtgttgataatgataataaatatattgaATTGGACTTTTGGACACCGAAGTTGAAGTTTGCTAGATCTCTTAGTGAGAAAACAAGTGATGGTACTACAGAAACTAAGACATGGAAAGTACCTACAGTTACAAACCCTTTAAAAGTTGCACTTCCTATGAATCCTGCATTTGATAACTTTTTGAAATTCTCTGATAATCAACCACCTACCGGTTTTTGTATCGAACTTTTTAAAGAGATTCGAGAAATTCTGAGTGACCAGTATTCTGGTCTTCCTTATAGATTTGACGCCTTCAATGAAACTTATGATACACTTCTGTTTAAAGTCATAAATGAGTCCTATGATGCTATTGTAGGAGATGTAACAATACTTGCGGACCGATCAAGGAATGTATCATTCACTCAACCATATACTGAGTCGGGCTTATCACTCATATTTCCCGCAGAAAATGAAGATTCAACATGGTTGTTTATGAAACCATTTAGCTGGGAAATGTGGTTTGCAACTCTTGGTATCCTCATCTACACAATGTTTATCATTTGGTTCTTGGAACATCACTTGAATCCTGAATTTGGTGGACCATTGAAAACTCAAATCAGCACCACTCTGTGGTTTGcttttacttctttattttttgctCATAGGGAGAACATAAGCACCAACACAGCAAGAGTAGTAGTTGCAGTATGGTTATCTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAATCTCTCATCATTGCTTACTGTCCAAAAATTGAGGTCTGAGAGAGACATTGAATGGCTTAAACAAAACAGACTACCAGTTGGTTGTGATAACAGCAGTACCTTTGTAAAGGACTACTTGGTCCAAGTGTATAATTTTCCTAGCGACCAAGTTGTAGATGTTGATAATGAACAAGACATTGTGGATAACTTCAAGAGCAAAAAAATTTCTGCTCTTTTTGTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAATACTGCAAAGATTACACTGGAACTACAGCAGCCTATAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGGGGCTCCGATAGCAAGAGACTTTTCTGAAGCCATTCTAACACTAGCAGAAAATGGAAGACTAAAAGCTTTAGAAGAGTATTGGTTAACACCTTCTAATAAATGCTCAAACAATTCAGCTTCACCAGAAACTGAGAGTCTGACTCTTGACAAATTTTGGGGACTTTATGTCATATGTGCTGCCACTTCCACCATATGCTTAGGACTAGCCTTATTGAAGAAGTATCTCCATAAACATAACCACTTTCAAAATGAAGCTCATCAACTTCCTCAAAGAGATGTCACTGCCGAAtctgatgatgataataataataataataatgatatgaAGAAATCATCAAGATATGGTAGAGTATTACATAATGGGAATATCACGACTTTAAATAAATCTGCAACTTTTGGAGGAAGTGCAATACAAGGTGTACGTCGTAGAAATTCACCAAGGTTGGAGAGTATAACCATTTCTGATGAACCGGGCAATCCACAACGTGCCCAATCAGCTGTCATAGAAATGATGTAA 2733 0.3498 MNFYAQSLNSVPNILLWLPLIISLLLFQCVANSSQTTSVGVIIDVNSETGKQQRIAMQVAAQSFNNNSNNQNIILFFRDSSRNPLQAASAAEELITKEKVKVIIGMETWQEAALVADLGEKFQVPTISFSSPLLVPSSSMQLRWSFLIQMAQNHSAHMNFIADMVHAFNSKKVIAIYEDNPYSSDSGMLSLLSEALEKVNSQIEYRLVLPPFTSLSDPKGFVLDELLKLLPLKSRVFIVLQASLPMVNHLFREAKKIGLLNKYSSWIINEEITSKLDYVDKSVLSSMEGVLGIKTSYSTSSSAYTQLSETLQAEHTEKVESKPGSKVLLAYDSISIVTKALEKMNTDSSSSKMLLEEMLSSNFNGLIGDIRLKERQLSYTPILRVIKVVDNDNKYIELDFWTPKLKFARSLSEKTSDGTTETKTWKVPTVTNPLKVALPMNPAFDNFLKFSDNQPPTGFCIELFKEIREILSDQYSGLPYRFDAFNETYDTLLFKVINESYDAIVGDVTILADRSRNVSFTQPYTESGLSLIFPAENEDSTWLFMKPFSWEMWFATLGILIYTMFIIWFLEHHLNPEFGGPLKTQISTTLWFAFTSLFFAHRENISTNTARVVVAVWLSLVFVLTSSYTANLSSLLTVQKLRSERDIEWLKQNRLPVGCDNSSTFVKDYLVQVYNFPSDQVVDVDNEQDIVDNFKSKKISALFVESPYEKVFLNKYCKDYTGTTAAYKFGGMGFVFQKGAPIARDFSEAILTLAENGRLKALEEYWLTPSNKCSNNSASPETESLTLDKFWGLYVICAATSTICLGLALLKKYLHKHNHFQNEAHQLPQRDVTAESDDDNNNNNNDMKKSSRYGRVLHNGNITTLNKSATFGGSAIQGVRRRNSPRLESITISDEPGNPQRAQSAVIEMM 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03989 910 PANTHER GLUTAMATE RECEPTOR 2 907 - -
Tsu08g03989 910 SUPERFAMILY Periplasmic binding protein-like II 423 768 - -
Tsu08g03989 910 SMART GluR_14 435 769 IPR001320 GO:0015276|GO:0016020
Tsu08g03989 910 Pfam Ligand-gated ion channel 769 799 IPR001320 GO:0015276|GO:0016020
Tsu08g03989 910 Gene3D - 542 674 - -
Tsu08g03989 910 Gene3D - 153 300 - -
Tsu08g03989 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 907 - -
Tsu08g03989 910 Pfam Receptor family ligand binding region 54 386 IPR001828 -
Tsu08g03989 910 Gene3D - 711 775 - -
Tsu08g03989 910 Gene3D - 44 380 - -
Tsu08g03989 910 MobiDBLite consensus disorder prediction 825 845 - -
Tsu08g03989 910 Pfam Bacterial extracellular solute-binding proteins, family 3 450 768 IPR001638 -
Tsu08g03989 910 Gene3D - 429 541 - -
Tsu08g03989 910 SUPERFAMILY Periplasmic binding protein-like I 35 461 IPR028082 -
Tsu08g03989 910 MobiDBLite consensus disorder prediction 825 853 - -
Tsu08g03989 910 MobiDBLite consensus disorder prediction 889 910 - -
Tsu08g03989 910 PIRSF IGluLR_plant 10 904 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03989 Tsu-Chr8 58175639 58179544 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03989 20 819 Ion Channels AT2G29120 31.206 1.51e-120 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03989 - - mtr:MTR_2g015290 1285.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03989 08 58175639 58179544 Tsu08g03989 08 58175639 58179544 ECH