Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03988 ATGTGGATTGCAACTATTGGTATCCTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCGCTTCAATCCTGAATTTGGTGGACCATTGAAAACTCAGATCAGCAACACTCTGTGGTTTGCTTTTTCCTCTCTATTTTCTGTTCACAGGGAGAAAATAAACAGCAACTCAGCAAGAATAGTAGTTGGAGTATGGTTATTTCTTGTGTTGGTTCTAACCTCAAGCTATACTGCAAATCTTTCATCATTGCTTACTGTCCCAAAATTGAGATCTGATAGAAACATTGAATGgcttaaacaaaacaaactacCAGTTGGTTGTGCTAGCACCAGTGCCTTTGTGAAGAACTACTTGATCCAAGTATATAATTTCCCTAGGCAACAAATTGTCGATGTTGAGGATGAACGTGACTCTATCgttaaattcaagagcaaaaaaaTTGCTGCTATCTTTGCTGAGAGCCCATATGTGAAGGTTTTCTTGAATAAACATTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGTTTGGGATTTGTATTTCAAAAAGGAGCTCCAATAGAAAAAGACTTTTCTGAAGCAATTTTAACATTAGCAGAAAATGGAAAACTCAAAGATTTGGAAGACAAATGGTTAACACCTTCCAATCAATGCTCAAACAACTCACCATCTCCACAAACTGAGAGCTTGACTCTTAATAAATTTTGGGGAATATATCTAATATGTGCTGCCACTTCCACCATCTGCTTATTACTAGCTTCATTGAAGAAGTACTTACATAAAGGAAATGTAATCTCCGaatttgatgataataaagGTAATCAAAATTGGACTGGACTGGATCGGCCAGTTCAACCGATTGAATTTGGAACCGAATATGCCTCCGGTCCAATCAACACTTCAAACCGCTATGCATCCGGTCCTATCAACACTTCAAACCGCTATGATACAGAACTTGTTATAAAACCAGTATGA 987 0.3587 MWIATIGILIYTMIIIWFLEHRFNPEFGGPLKTQISNTLWFAFSSLFSVHREKINSNSARIVVGVWLFLVLVLTSSYTANLSSLLTVPKLRSDRNIEWLKQNKLPVGCASTSAFVKNYLIQVYNFPRQQIVDVEDERDSIVKFKSKKIAAIFAESPYVKVFLNKHCKDYTATTAAYKFGGLGFVFQKGAPIEKDFSEAILTLAENGKLKDLEDKWLTPSNQCSNNSPSPQTESLTLNKFWGIYLICAATSTICLLLASLKKYLHKGNVISEFDDNKGNQNWTGLDRPVQPIEFGTEYASGPINTSNRYASGPINTSNRYDTELVIKPV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03988 328 Gene3D - 134 224 - -
Tsu08g03988 328 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 286 - -
Tsu08g03988 328 Pfam Ligand-gated ion channel 1 248 IPR001320 GO:0015276|GO:0016020
Tsu08g03988 328 SMART GluR_14 5 218 IPR001320 GO:0015276|GO:0016020
Tsu08g03988 328 SUPERFAMILY Periplasmic binding protein-like II 74 222 - -
Tsu08g03988 328 Gene3D - 1 130 - -
Tsu08g03988 328 Pfam Bacterial extracellular solute-binding proteins, family 3 86 217 IPR001638 -
Tsu08g03988 328 PANTHER GLUTAMATE RECEPTOR 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03988 Tsu-Chr8 58173246 58174779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03988 1 256 Ion Channels AT1G42540 38.697 1.37e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03988 - - gmx:100818078 396.741