Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03987 ATGCAAATTGCAGCTCAAAGTTTCAACAATTATTCCAATAATCAAAACATAATCCTTTTCTTCCGTGATTCTAGTAGAAACCCTTTACAAGCAGCTTCAGATGCTGAAGAATTAATTACTAAAGAGAAAGTTAAAGTGATTATTGACATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGATCTTGGAGCCAAGTTTCAAGTACcaacaatttcattttcttctccACCATTATTCTCTTCATCATTAGTGCAACTTCGTTGGCCTTTCTTAATTCAAATGGCACAGAATCATTCTGCACATATGAACTTCATGGCTAATATGATCCATGCTTTCAACTCTCAACAAGTTATAGTTATATACGAAAACAACCCTTATAGTAGTGATTCTGGAATGTTAAGCCTCTTATCCGAGGCTCTCCAAAAGGTAAACTCGCAGATTGAGTATGTCTTAGTTCTTCCACCATTCACTTCTTTATCTGATCCAAAAGGGTTTGTTCTTAATGAATTGTTGAAGTTGCTGTCATTAAAATCTCGTGTTTTTATTGTACTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTACAGAAGCTAAGAAAATTGGATTATTGGAGAAAGATTCATCTTGGATAATCAATGAGGAGATTGCAAGCATGTTGGACTATGTAGATAGATCTGTTTTATCTTCTATGGAAGGTGTTTTAGGAATCAAAACCAACTATTCTACAAGTTCCAGTGCTTATACTCAATTGCAGAAAAACTTTCAAGCTGGATCAAATGTCTTGCTAGCTTATGATAGCATTACAATTGTCACAAAGGCTTTGGAGAAAATGAATACTGATTCTAGTAGCTCAAAGATGTTATTGGAGGATATGTTATCTTCAAATTTCAGTGGCTTAATTGGAGATATAAGATTCAATGAAAGACAACTATCCTACACTCCAATATTAAGGGTCATTAAAGTTGTTGATAATGATAAGAAACATAGGGAATTGGACTTTTGGACACCAAAGTTGAAGTTTGTTAGATCTCTTAGTGACGAAACAAGTGATGGAACTATTAAAAGCTTAAATGACTCTGTACCTAAGAGATGGAAAGTACCTACAATTACAAACCCTTTAAAAGTTGCAATTCCTATGTATGCTTCATCTGATAACtttttgaaagtttctcaaAATCAATCTGCTACCGGTTTTTGTATTGATCTTTTCAATGAGATCCGAGAAATTCTGAGTGACCAGTATGCCGGTCTTCCCTATAGATTTTACCCTTTAAATGCATCTTATGATTCAATTCTGCTTAAAGTCATAGATGAGGTAAAGTAA 1326 0.3356 MQIAAQSFNNYSNNQNIILFFRDSSRNPLQAASDAEELITKEKVKVIIDMETWQEAALVADLGAKFQVPTISFSSPPLFSSSLVQLRWPFLIQMAQNHSAHMNFMANMIHAFNSQQVIVIYENNPYSSDSGMLSLLSEALQKVNSQIEYVLVLPPFTSLSDPKGFVLNELLKLLSLKSRVFIVLQASLPMVNHLFTEAKKIGLLEKDSSWIINEEIASMLDYVDRSVLSSMEGVLGIKTNYSTSSSAYTQLQKNFQAGSNVLLAYDSITIVTKALEKMNTDSSSSKMLLEDMLSSNFSGLIGDIRFNERQLSYTPILRVIKVVDNDKKHRELDFWTPKLKFVRSLSDETSDGTIKSLNDSVPKRWKVPTITNPLKVAIPMYASSDNFLKVSQNQSATGFCIDLFNEIREILSDQYAGLPYRFYPLNASYDSILLKVIDEVK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03987 441 Gene3D - 1 314 - -
Tsu08g03987 441 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 439 - -
Tsu08g03987 441 SUPERFAMILY Periplasmic binding protein-like I 2 336 IPR028082 -
Tsu08g03987 441 Gene3D - 97 315 - -
Tsu08g03987 441 Pfam Receptor family ligand binding region 1 320 IPR001828 -
Tsu08g03987 441 PANTHER GLUTAMATE RECEPTOR 1 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03987 Tsu-Chr8 58171183 58172775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03987 7 436 Ion Channels AT5G11180 28.514 9.17e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03987 - - mtr:MTR_2g015290 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03987 08 58171183 58172775 Tsu08g03987 08 58171183 58172775 ECH