Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03984 ATGGCTTTGCAACTATTGAGAAATCGCGCCACATCGTCGGCCTTCAATTTGTTCTCCAATGCTCTTCGCCGTTTCTCTTCTGCCGAGGTTTCGAACGGCATTCCCGAAGAGGCACGTGAGAGAATGATGTATTCTGACATAAACTCACAGATTGGTAGTTGCATGCCTCTCTCTTCGATGCGAATTGGAACAATAATTCACAACATTGAGCTGAACCCAGGGCAAGGTGGAAAGCTGGTCCGAGCAGCCGGAACCAATGCAAAGATCTTGAAAGAGCCCACATCACAGTACTGTTTAATTCAACTCCCCTCTGGTGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACTATTGGTACTGTCTCTAATACAACTCACGGTGACCGTAAGCTTCGGAAAGCTGGCCATAGCAGATGGCTTGGTCGGAGACCGGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCATCCTCATGGTGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTGGATGGGGGAAAGGATCCCGCACTCCTTGGGGTAAGCCAACCAAGGGTGGCTTCAAGACTGGGCCTCTTAAACGGAAAAAAGGTAGGTAA 597 0.4925 MALQLLRNRATSSAFNLFSNALRRFSSAEVSNGIPEEARERMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSQYCLIQLPSGVKKLIDSRCRATIGTVSNTTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGGWGKGSRTPWGKPTKGGFKTGPLKRKKGR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03984 198 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Tsu08g03984 198 PANTHER RIBOSOMAL PROTEIN L2 43 196 IPR002171 GO:0003735|GO:0005840|GO:0006412
Tsu08g03984 198 Gene3D - 45 121 IPR014722 -
Tsu08g03984 198 Gene3D Ribosomal protein L2, domain 3 122 198 IPR014726 -
Tsu08g03984 198 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Tsu08g03984 198 MobiDBLite consensus disorder prediction 150 198 - -
Tsu08g03984 198 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Tsu08g03984 198 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
Tsu08g03984 198 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 43 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03984 Tsu-Chr8 58135212 58137296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03984 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 45.000 7.59e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03984 - - gmx:100792418 295.819